Shewanella oncorhynchi: RA178_15615
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Entry
RA178_15615 CDS
T09381
Name
(GenBank) transcriptional regulator GcvA
KO
K03566
LysR family transcriptional regulator, glycine cleavage system transcriptional activator
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sog03000
]
RA178_15615
Transcription factors [BR:
sog03000
]
Prokaryotic type
Helix-turn-helix
LysR family
RA178_15615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_30
HTH_5
Motif
Other DBs
NCBI-ProteinID:
WMB71841
UniProt:
A0AA50Q560
LinkDB
All DBs
Position
complement(3482838..3483749)
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AA seq
303 aa
AA seq
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MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSL
LLTEEGQSYFLDIKDIFIQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLAKFSEKN
PDIDVRIKAVDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGPKPL
SKPSDLKYHTLLHDMNRHDWQAWFRQCGITDINVNQGPIFSHSSLVLQAAAHGQGVALGY
SVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWMLDMFAEESRSEL
LPG
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaagattaccaccgcttaatgcggttaaagcttttgaggcagccgcgcggcat
ttgagctttacgcgggcagcggaagaattgtttgttacgcaggctgcggtgagccatcaa
ataaaggcattagaagatttcctcggattaaaattatttcgtcgaaagaaccgttctttg
ctattaaccgaagaagggcagagctattttctcgacatcaaagatatctttattcagctt
gccgatgctaccgacagattactcgcccgcagtgctattggttcgctgacggtcagtatg
tcacccagttttgcgattcaatggctagtgccacgcttggctaaattcagtgagaaaaat
cccgatatcgatgtgcgaataaaggccgttgataccgaagcgagttcattaaccgatgat
gtggatgtggctatttattatggcttaggtaattggcctgggctacgtgcagataagctc
agaaacgaagtgcttattcccgtgtgttcgcccatgttgctcaacggtcctaaaccactt
tcaaaaccgagcgatttaaagtatcacacgctattacatgatatgaatcgtcacgattgg
caggcgtggtttaggcaatgtggcattaccgatattaatgtgaatcaaggacctattttc
agtcattcgtctttggtattgcaggcggcggcccacggtcaaggggttgctctgggttac
agcgtgctggcacgccccgatatcaaagctgggcggcttgtgtgtccattccaagaagtc
ttagtcagtaaagatgcttactacttagtttgccagcaaaaccatgctgagctgggtaaa
gtggtggcgtttcgtgaatggatgttagacatgtttgccgaggagtctcgcagtgagttg
ttgcctggataa
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