Shewanella oncorhynchi: RA178_16870
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Entry
RA178_16870 CDS
T09381
Symbol
clpB
Name
(GenBank) ATP-dependent chaperone ClpB
KO
K03695
ATP-dependent Clp protease ATP-binding subunit ClpB
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
sog03110
]
RA178_16870 (clpB)
Chaperones and folding catalysts [BR:
sog03110
]
Heat shock proteins
HSP100
RA178_16870 (clpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
AAA_lid_9
ClpB_D2-small
AAA
Clp_N
AAA_5
AAA_22
AAA_16
Sigma54_activat
AAA_24
AAA_14
TniB
nSTAND3
IstB_IS21
bpMoxR
AAA_18
ATPase_2
AAA_7
NBD_SMAX1
DUF815
AAA_25
NACHT
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WMB72078
UniProt:
A0AA50KBW7
LinkDB
All DBs
Position
complement(3788422..3790995)
Genome browser
AA seq
857 aa
AA seq
DB search
MRLDRMTNKFQLAISDAQSLALGRDHQFIEPLHLMMALLNQDSGSIHPLLTQAGIRVSAL
RSLLSQELERLPQVEGTGGDVQLSQGLIRLLNLCDKLAQKRKDKYISSELFVLAALEGAD
ALAQALKKAGATKELMEQTIEQMRGGQKVDDPNAEDQRQALKKFTIDLTERAEQGKLDPV
IGRDDEIRRTIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGIKNKRVLSL
DMGSLIAGAKYRGEFEERLKAVLNELAQEEGQVILFIDELHTMVGAGKGEGAMDAGNMLK
PALARGDLHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYELH
HHVEITDPAIVAAATMSHRYVSDRKLPDKAIDLIDEAASSIRMQMDSKPESLDRLERRAI
QLKLEEQALAKENDEASRRRLDHLQEELRDVEAKASELNEIWRTEKAALAGTQHIKADLE
QARMDLEVARRAGDLTRMSELQYGRIPELEKQLDLASQAEMQDMTLLRNKVTEFEIAEVL
SKATGIPVSKMLEGEREKLLQMEVALHERVIGQNEAVDAVANAIRRSRAGLADPNRPIGS
FLFLGPTGVGKTELCKSLARFLFDTESALVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGG
YLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL
GSDIIQEGFGQVTYAEMKAAVMNVVTHSFRPEFLNRIDESVVFHPLDAANIKRIASIQIA
SLRQRLAEKDYTLEITDDALSLIAEIGFDPVYGARPLKRALQQEVENPLAQKLLRGDLLP
GKPIKVSCAGGELVFEQ
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgcgactcgatcgtatgaccaataaatttcagcttgccatctctgatgcccagtcactc
gcacttgggcgtgatcatcagtttattgaaccgctgcatttgatgatggcattgttgaac
caagattcaggttcaatccatcccttattgacccaagctggcattcgagtgagtgcgctg
cgatcgctcttgagtcaagagctggaacgcttacctcaagttgaagggactggcggcgat
gtacaattatcccaaggtttaatccgtttattaaatctgtgcgataaattggcgcaaaag
cgtaaagataaatatatctctagcgaattatttgtattagctgcgttagaaggtgccgat
gctcttgcacaagcgttgaaaaaagccggcgcgaccaaagagttgatggaacaaaccatt
gaacaaatgcgcggcggccaaaaagtggatgatccgaacgctgaagatcaacgccaagcg
ttgaagaagtttactatcgatctcaccgagcgagccgaacaaggcaagttagatcctgtg
atcggccgtgacgatgaaattcgccgcacgatccaagtattacaacgtcgcagtaaaaac
aaccccgtccttatcggtgaaccgggtgtgggtaaaacagcgattgttgaaggactcgcc
cagcgtatcgttaatggtgaagtccccgagggcattaaaaataagcgtgtcttatcactc
gatatgggctcattgattgcgggcgctaaatatcgcggtgagttcgaagaacgtttaaaa
gcggtattgaatgagttagcgcaggaagaaggtcaagtgatcctcttcatcgacgagctg
catactatggtcggcgccggtaaaggtgaaggcgcaatggatgcgggtaacatgctcaaa
cctgcgttagcgcgtggtgacttgcactgtgtgggtgcgacaacgcttgatgagtatcga
cagtatattgaaaaagatgcggcgcttgaacgacgtttccaaaaagtgttggtggatgag
ccaagcgttgaagacaccattgctattttgcgtggactgaaagaacgttacgagctgcat
caccatgtggaaattaccgatccggcgattgtggcggcggcgaccatgtcgcaccgttat
gtgtcggaccgtaagttacccgataaagcgatcgatttgatcgatgaagcggcatcgagc
atccgcatgcaaatggactcaaaacctgagtcactcgacaggctcgaacgtcgtgctatc
cagctcaaactggaggagcaagcgttagccaaagaaaatgatgaggcgagtcgtcgcagg
cttgaccatctgcaagaggaattacgtgacgttgaagcgaaagcttcagagttgaacgaa
atctggcgtactgaaaaagccgcattagcgggcactcagcacataaaagccgatctcgaa
caggctcgaatggacttagaagtggcgcgtcgtgcgggtgatttaactcggatgtctgag
ctgcaatacggtcgtattcctgagcttgaaaaacagctcgatttggcatcgcaagccgaa
atgcaggacatgacgttattgcgtaacaaggttactgagttcgaaatcgccgaagtactg
tcgaaagcgacgggaatacccgtatcgaaaatgctggaaggcgagcgcgaaaaattactg
caaatggaagtggcgctgcacgagcgtgtgatcggccaaaacgaagccgtcgatgcggtc
gcgaatgcgattcgtcgtagccgcgcgggtctggcggatccaaatcgcccgattggctcg
ttcctgttcttaggcccaacaggtgtaggtaaaactgagctgtgtaaatcactggcgagg
ttcttatttgataccgaatcggctttagtgcgcattgatatgtctgagtttatggaaaaa
cactcagtatcgcgtttagtgggtgcgcctccaggatacgtaggttatgaagagggcggt
tacttaacggaagccgttcgtcgcaaaccttattcagtgatattgctcgacgaagtcgag
aaagcgcatcccgatgtgtttaacattttactgcaagtgcttgatgatggacgcttaacc
gatggtcaaggtcgtactgtcgattttagaaatacagtgatcatcatgacctcgaactta
ggctccgacattatccaagaaggatttggtcaagtgacctatgcagagatgaaagcggcg
gtaatgaatgtggtcactcacagtttcagacccgagttcttaaaccgtatcgatgaatct
gtggtgttccatccattggatgctgccaatatcaaacgtattgcttcgatacaaattgct
tccttacgccaacgtttggctgaaaaggactatacattggagatcaccgacgacgcatta
tcactgattgcggaaattggtttcgatcctgtgtatggtgcaagaccgttgaaacgggca
ttgcagcaagaagtcgaaaacccgctggcgcagaaattactgcgtggtgacttgttgccg
ggtaaaccgatcaaggtcagctgtgcgggtggcgagttagtgttcgagcaataa
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