Shewanella oncorhynchi: RA178_16880
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Entry
RA178_16880 CDS
T09381
Symbol
rluD
Name
(GenBank) 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
KO
K06180
23S rRNA pseudouridine1911/1915/1917 synthase [EC:
5.4.99.23
]
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sog03009
]
RA178_16880 (rluD)
Enzymes [BR:
sog01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.23 23S rRNA pseudouridine1911/1915/1917 synthase
RA178_16880 (rluD)
Ribosome biogenesis [BR:
sog03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RA178_16880 (rluD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
TruB_N
Motif
Other DBs
NCBI-ProteinID:
WMB72080
UniProt:
A0AA50KBR7
LinkDB
All DBs
Position
complement(3791930..3792904)
Genome browser
AA seq
324 aa
AA seq
DB search
MTQEINLKSEISATQTGLRLDQALAELFPDYSRTRIKEWILSDAVYVDGVVVNKPREKVY
ELQQILIDATLEEEVHAAAQAIDLDIVYEDDDIIVINKQAGLVVHPGAGNADGTLMNALL
HHCPDIEHVPRAGIVHRLDKDTTGLMVVAKTVEAQTHLVAALQAREITREYEAIVMGTMT
GGGTVDEPIGRHPTKRTHMAVHHSGKPAVTHYRVAEKFRNHTRLRLRLESGRTHQIRVHM
EYIGHVLVGDPVYGGRPKPPKWASPEFFDILKNFKRQALHAVRLELAHPVSCEIMSWHAP
IPEDMVILTKALRQDTVEHPIEYL
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgacacaagagattaatctaaaaagcgagatttcggcaacacaaactggactgagatta
gatcaggccctagcagagttgttcccagattactcgcgcacgcgcatcaaggaatggatc
ctatctgatgcagtttatgttgacggcgttgtcgttaataagccccgagagaaagtttat
gagctgcaacagatactcatagatgccactcttgaagaagaagttcacgcagcggcacag
gccattgatctggatatcgtctatgaagatgacgacattattgtgatcaacaagcaagcg
ggactcgtggttcaccctggtgctggcaatgccgatggcactttgatgaatgctctgttg
caccattgtcctgatattgagcatgtaccacgtgctggtattgtgcaccgtctggacaag
gatactacaggtttaatggttgtagccaaaaccgttgaagcgcaaacccatttagtggcc
gccttgcaggcccgtgaaatcactcgtgaatacgaagcgattgtgatggggactatgaca
ggtggcgggactgttgatgagccgattggtcgtcatccaacgaaacgtactcatatggcg
gtgcatcactcaggtaaacctgcagtgacgcattatcgtgtggcggaaaaatttcgtaac
cacactcgtctaagattgcgccttgaatctggtcgtactcaccaaattcgtgtgcacatg
gaatacataggccacgtattagtgggcgatcctgtgtatggtggtcgtccaaaaccgccg
aaatgggccagcccagagttttttgatattctgaaaaacttcaagcgccaagcgctgcac
gcagtgcgtcttgaattagcgcatcctgtgagttgtgaaatcatgagctggcacgcgcca
attcctgaagacatggtgattttgacgaaagcactgcgtcaagacacggtcgagcatccg
atcgagtatttgtaa
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