Shewanella oncorhynchi: RA178_17155
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Entry
RA178_17155 CDS
T09381
Symbol
ung
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RA178_17155 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sog03400
]
RA178_17155 (ung)
Enzymes [BR:
sog01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
RA178_17155 (ung)
DNA repair and recombination proteins [BR:
sog03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RA178_17155 (ung)
Prokaryotic type
RA178_17155 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
WMB72130
UniProt:
A0AA50Q5S0
LinkDB
All DBs
Position
complement(3845334..3845999)
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AA seq
221 aa
AA seq
DB search
MTQATWQTFIDEQRALPYFQQLSAFVDNERRAGKVVYPSEANVFNAFSMTPLEQVRVVLI
GQDPYHGPDQAHGLCFSVKRGIKPPPSLANMYKELATDIEGFVVPSHGDLSAWAEQGILM
LNTVLTVEQGKAHSHAKAGWEVFTTAVLELLNRQTQPIIFVLWGSHAIKKGQVVNAPQHQ
VLTGPHPSPLSAYRGFFGCGHFSQVNQLLLERGETPILWQV
NT seq
666 nt
NT seq
+upstream
nt +downstream
nt
gtgactcaggcgacatggcaaacatttatcgatgagcaaagagctttgccttattttcag
caactaagcgcatttgttgacaatgagcgcagggctgggaaagtggtttatccatctgag
gctaatgttttcaatgcttttagtatgacgccccttgaacaagtcagagtggttttgatt
ggccaagatccctatcacggcccagatcaagcccatggtttatgtttttcggttaaacgc
gggataaaaccaccgccatctttagccaatatgtacaaagaattagcgacggatattgaa
ggttttgttgtgccatcccatggcgatttatccgcatgggcggagcaggggatattgatg
ctcaatacggtgctgacggttgagcaaggcaaggcgcattcccatgccaaagccgggtgg
gaagtctttacgactgcggtgctggaattattaaatcggcagactcagccgattattttc
gtgctttggggcagtcatgccatcaaaaaaggtcaagtcgttaacgcaccgcaacatcaa
gtgctcacaggaccacatccttcacctttatcggcttatcgcggtttctttggttgtggg
catttctctcaagtgaatcaattattgcttgagcgaggcgaaacgccgatcctttggcag
gtttga
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