Shewanella oncorhynchi: RA178_17620
Help
Entry
RA178_17620 CDS
T09381
Symbol
fdhF
Name
(GenBank) formate dehydrogenase subunit alpha
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog00630
Glyoxylate and dicarboxylate metabolism
sog00680
Methane metabolism
sog01100
Metabolic pathways
sog01120
Microbial metabolism in diverse environments
sog01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
RA178_17620 (fdhF)
09102 Energy metabolism
00680 Methane metabolism
RA178_17620 (fdhF)
Enzymes [BR:
sog01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
RA178_17620 (fdhF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Pyr_redox_2
Molydop_binding
Fer4_20
Molybdop_Fe4S4
Pyr_redox
Pyr_redox_3
NAD_binding_8
Fer4_7
Fer2_4
DAO
Fer4
HI0933_like
Fer4_6
Fer4_8
NAD_binding_7
FAD_oxidored
Thi4
Fer4_16
GIDA
FAD_binding_3
Fer4_9
Fer4_18
FAD_binding_2
Fer4_2
Amino_oxidase
AlaDh_PNT_C
Fer4_10
Shikimate_DH
Fer4_21
Fer4_17
Lys_Orn_oxgnase
Fer4_15
2-Hacid_dh_C
Fer4_22
Motif
Other DBs
NCBI-ProteinID:
WMB72220
UniProt:
A0AA50Q5V5
LinkDB
All DBs
Position
3965305..3969570
Genome browser
AA seq
1421 aa
AA seq
DB search
MIELRIDDQVLSVNPTDNLLQVAHAAGIAIPSLCDPSAASQQLGVHEHADKQACNLCVVQ
IENSDASLRCVRACETSATVGMRVITQSEFLSQKRKQALTEILSDHFADCEAPCQQACPA
GVDVQSYLYHIAQGNHTEAVKVIKQTLPLPLSIGRVCPAFCEAQCRRGLVDEPIAIRQLK
RHAADLDLADGENGGISYVPPRQTDTGKKVAIIGAGPAGLSAGYYLSNQGHSVEIFESMP
QAGGWLRYGIPEYRLPKTILDKEIALLCRNGLTIHTETRLGNEIHLNQLVEDFDAVCLAI
GAQKAVPMDYPGSTLAGCYLGVDYLKDHCLEKTLVLGKKVAVIGGGNTAIDCARTAVREG
CDVTLIYRRTRAEMPAEAYEVHEAEVEGVKFHFLTNPLENHSDAQGRVHSVTFAKMALGE
ADASGRRAPVDTGETFTQDFDAVIAAVSQTPDMSFMQDPASHLSNGELALSRWNTFIGCE
HTMSSGVEKLFVVGDARRGPATAVAAIGDGHKAAIAIDKLLKQGLSCELHATEFNSSKAV
GNTIKQVLPTTELYPSVARKARLTMPELNAVQRLLNYGEVELGFAPDAAMQEAARCLECA
CQANTDCKLRDYATDYHVEPKSLNTQSARKFSVDKSSPFIQFDANRCISCGKCVDVCQLQ
SGHCAIQFAHDSYQALPQDISETATRRAPRVGFSASMADSKCVQCGNCVQVCPTGALVDA
RDKRQGNETPLKTASTICTYCGVGCRLDLKIDTSTNQIRHIEGNKESVVNQGMLCVKGRF
GFDFIHSEKRLTTPLIRKNGQLTPSSWPEAIAYVAEHLLQIKQQYGSNALASLASAKATN
EENFLLQKFVRSILGTNNIDHCARLCHSSTVTGLQQSIGSGAMTNDIPSIQASDVIFIIG
SDTSSAHPIIASKIKQAVALHGARLMVADPKRVAIADSAQLYVAHRPGTDVMLLNAIMAE
IIRNDWQDKSYIAARTEGVDALYAELKKVDYSLENAALITGVKAEDIARIAQTIGTADKT
AVYYAMGITQHTTGHDNVTAISNLQLLCGNIGVEGAGINPLRGQSNVQGACDMGALPNFF
SGYQKVTDIHARMRFEAHWQTPLSGEIGVTATHMMHDISKGKIKALYVMGENPVLSDPDQ
AHVLRALNAIDFLVVQDIFLTETAELADVVLPAAAFVEKRGHFTNTERRVQRLEQALLPP
GEALPDWQIVQAIANAMGAAWDYPNEEAIWQEINELTPQYRGITWQRLSTGDDGKIPQGI
QWPCPDETHPGTPIMHQGQFTRGLGKFTPVSYRLPAEMPCSEYPLTLSTGRLLEQFHTGT
LTRKTAGLDLLGSPKVMISVYDAEQLGIGNGDKIKLTTRRGEIEIDAFVTKRAQAGVLFL
PFHFVEAAANKLTINALDPVAFIPEYKVCSVRVERVAEKID
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacttcgaattgatgaccaagtgttgtcggttaatccgactgataacctactg
caagtggcgcatgctgctggcatagcaatacccagcttatgtgatcccagtgcagcctcg
cagcaattaggcgttcacgaacatgcagacaagcaagcctgcaatttgtgtgtcgtccag
attgagaattccgacgccagtttgcgctgcgtacgcgcctgtgaaacgtccgccacagtc
ggcatgcgagtcataactcagtctgaattcttaagtcaaaaacgcaaacaagcgctgact
gagatcttgagcgatcattttgccgattgcgaagccccctgccaacaagcatgccctgcg
ggcgtcgatgtgcagagttacctgtatcacatagcccaaggcaaccatactgaagccgtt
aaagtcattaaacaaactttgccgctgccactctccattggccgtgtctgccctgctttt
tgtgaagcacaatgtcgccgcggactcgtcgatgagcccattgccatacgccaattaaaa
cgtcacgccgccgatctcgacttagctgatggcgaaaatgggggcataagttatgtcccg
ccacgccaaaccgacacgggcaaaaaagtcgccattatcggtgcgggtccagcagggtta
agtgccggatattacttatcaaaccaaggccatagcgttgagatattcgaatctatgcca
caggcgggtggttggctacgttatggtattcctgagtatcgtttacctaaaacgatacta
gacaaggagatcgcactcctgtgccgcaatggcttaaccatacacacagaaactcgtctc
ggtaacgagatacatttaaatcaattagttgaagattttgatgccgtctgtctcgccatt
ggcgcccaaaaagctgtgcctatggattatcccggcagcacactcgcgggttgctactta
ggtgtcgattacttaaaagatcattgtctcgaaaagacacttgttttaggtaagaaagtc
gccgtcattggcggtggcaataccgctattgattgcgcccgcacagcggtgcgtgaaggc
tgcgatgtcaccctaatttaccgtcgtacccgcgcagaaatgcccgccgaagcttacgag
gtacatgaggccgaagtcgaaggggtgaagtttcattttttaaccaatccgcttgaaaac
catagcgatgcgcaaggtagagtccattcagtcaccttcgctaagatggcactcggcgaa
gctgatgcctctggcagacgcgctcccgttgataccggtgaaacctttactcaagatttc
gacgctgtgatagccgcagtatcacaaactcccgatatgagttttatgcaagatcccgcg
agccacttaagcaatggtgaactcgctctcagccgctggaatacctttattggctgcgag
cacactatgtcgtccggggttgaaaaactctttgtggtaggggatgcgcgccgcggtcct
gctaccgcagtcgccgcgataggcgatggccataaagccgcaattgccatagataaattg
ctcaaacaaggcctaagctgtgagctacatgcaactgaatttaattcatcaaaagccgtc
ggtaacacaataaaacaagtcttgccaactaccgagctctacccctctgtcgcacgtaaa
gcccgcttaaccatgcccgaattgaacgcggtgcaacgtttactcaattacggcgaagtc
gaactaggctttgctcccgatgccgccatgcaagaagctgctcgctgcctcgaatgcgcc
tgccaagccaatacggattgtaaattaagggactatgcgaccgactaccatgtcgaacct
aagtcactcaacactcaaagcgcgcgtaagttttcggtcgataaatcgagtccgttcatt
caatttgatgctaatcgttgtattagctgtggtaagtgcgtcgatgtgtgccagttgcag
agtggccattgtgcgattcaatttgcccatgattcttatcaagcgctgccgcaagacata
agtgaaaccgccacgcgccgcgcaccgagagtcggctttagcgccagcatggccgatagc
aaatgtgtgcaatgcggcaactgtgtgcaggtttgtccaacgggcgcactcgtcgatgcg
cgggataaacgccaaggcaatgaaacgccactcaaaaccgcctcaacgatttgtacctat
tgcggcgtaggctgtcggcttgaccttaaaatcgataccagcacgaatcagatccgtcat
attgagggcaataaagagtctgtggttaaccaaggcatgctctgcgtcaaagggcgattt
ggcttcgattttattcacagtgaaaaacgcctcaccacgccactcattcgtaaaaatggc
cagctcacgccgagtagttggcctgaagctatcgcctatgtggccgaacatttactgcaa
ataaaacagcaatatggcagcaatgcactggcaagtttggcctcggcaaaagccaccaat
gaagaaaacttcctcctgcaaaaatttgtcagaagcatactcggcaccaataacatcgac
cattgcgcccgtctgtgtcattcatccacagtcacagggctacagcaaagtatcggcagt
ggtgccatgaccaatgacattccgagcattcaagcatcggatgtgatttttatcataggc
tcagacaccagcagtgctcacccgatcatcgcctcgaaaattaagcaagccgtggctttg
catggcgcaagattaatggtggccgatcctaaacgtgtcgccattgccgacagtgcacag
ctttatgtcgcccacagacccggcactgacgtcatgctactcaatgcgattatggcggaa
attatccgcaacgactggcaggataaaagctacattgccgcgcgcaccgaaggcgtggat
gctctctatgctgaactaaaaaaagtagattacagcctagaaaacgcagccttgataaca
ggtgttaaagccgaagatatcgcccgcatcgcccaaaccataggcacggccgacaaaacc
gcagtctactatgccatgggcattacccagcacacgacgggacacgacaatgttaccgcc
atatctaatctacaacttctgtgcggcaatattggagttgaaggagcggggattaatcca
ctgcggggacaaagtaatgtgcaaggtgcctgtgacatgggcgcactgcctaacttcttc
agtggttatcaaaaagtcaccgacattcacgccagaatgcgtttcgaggcacattggcaa
acgccgttatcgggagaaattggcgtaaccgccacccatatgatgcatgatatttccaaa
gggaaaatcaaggcgttgtatgtgatgggcgaaaaccccgtattaagcgacccagatcaa
gcccatgtgcttagggcgcttaatgcaatcgactttttagtggtgcaggacatcttcctc
acagaaaccgccgagcttgccgatgtggttctgcccgccgcagcctttgtcgaaaaacgc
ggtcatttcactaatactgaacgacgagtgcagcgactcgaacaagccctgctaccgcca
ggtgaagccctgcccgattggcaaattgtccaagccattgccaatgcgatgggtgccgct
tgggattaccctaatgaagaagcgatttggcaggaaatcaatgagctgacaccacaatat
cgcggcattacttggcaacgattaagcactggagatgacggtaaaattccccaaggtatt
caatggccttgcccagatgaaacccatccgggaacgcccatcatgcaccaaggtcaattc
acccgcggcttaggtaagtttacgccagtgagttatcgcttacccgcagaaatgccctgc
agtgagtacccgctcactctgtcgaccggacgtttactggaacagttccacacaggcacc
ttaacccgtaaaacggctggactcgacttactcggctcgcctaaggtaatgatttcagtc
tatgacgccgagcaactcggcataggcaatggcgataaaatcaaacttactacccgtcgc
ggcgaaattgaaatcgacgcctttgtgacgaaaagagcccaagctggcgtactattcctg
cccttccactttgtggaagctgcggcgaataaactcaccatcaatgcactcgatcctgtc
gcttttatcccagaatataaggtctgctcggtaagggttgagcgggttgccgagaaaatt
gattag
DBGET
integrated database retrieval system
