Shewanella oncorhynchi: RA178_17755
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Entry
RA178_17755 CDS
T09381
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sog
Shewanella oncorhynchi
Pathway
sog03410
Base excision repair
sog03430
Mismatch repair
sog03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RA178_17755 (recJ)
03430 Mismatch repair
RA178_17755 (recJ)
03440 Homologous recombination
RA178_17755 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sog03400
]
RA178_17755 (recJ)
DNA repair and recombination proteins [BR:
sog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RA178_17755 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RA178_17755 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RA178_17755 (recJ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WMB72245
UniProt:
A0AA50KC30
LinkDB
All DBs
Position
complement(3996395..3998119)
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AA seq
574 aa
AA seq
DB search
MIHKIVRRPTVDDSHLPAHLSPLLKQLYARRGALNHECELVLKGLFRPETMKGLPEAAVL
IADAMQANKSILIVGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPEIVA
VAASKQAELLITVDNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPGCP
FASKSIAGVGVAFYLMTALRAELRTRNWYQTHGIAEPNLGTLLDIVALGTVADVVSLDAN
NRILVEAGLQRVRAGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALG
VETLLCEDMMYARRMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEAELPWGIALFQE
DWHQGVIGILASRIKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNTRHPGLI
IKFGGHAMAAGLSLKAGSFAIFAKAYDDAVREQLKPELLTGELWSDGELTPAELNLEMAQ
LLRNAGPWGQAFEEPLFDGYFTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWP
DATINHAHVVYKLDVNEYRGNFSLQLMVEQIEAM
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
ttgatccataagatagtccgtcgcccaaccgttgatgatagccatttacccgctcatctt
tcgccgctattgaaacagctttatgctcgtcgtggtgcgctaaaccacgaatgcgagctt
gtccttaagggtctattcagacctgaaaccatgaaagggttgcccgaagccgcggtgctt
atcgccgatgcaatgcaggcgaataagtcgattttgatcgtgggtgactttgacgccgac
ggtgccacatcgaccagtgtgtgtatgttggcgctgcggatgatgggcgcggtgaaagtg
gattacttgatccccaatcgcttcgattatggttacggcttaagccctgaaattgttgca
gttgcggcctccaaacaggcagagctactcatcacagttgataatggtatttcatcaatt
gacggtgttgcggcggccaaagcctttggtatgcaagtggtgattaccgaccatcattta
cccggccatgagttacccgctgccgatgcgatagtgaaccctaaccaacctggctgtcca
tttgccagcaaatcgattgcgggtgtcggcgtggccttttatttgatgacggcattaagg
gctgaattgcggacgcgaaactggtatcaaacccatggtattgctgagcccaatttaggc
acactactcgatatcgttgcccttggcaccgttgccgatgtggtgtcactcgatgccaat
aatcgtattttggttgaagcaggtttgcagcgcgtgcgagccgggcgttgccgtgtgggg
attactgcgttgcttgaagtggcgaagcgaaatccggcgcgcattgtcgcatctgacttt
ggttttgccgtgggcccaaggcttaatgccgcaggccggttggatgaaatggcacttggg
gttgaaaccttactctgcgaagacatgatgtatgcacggcgcatggcggcagagcttgac
ggattgaatcaagaacgtcgtgagctggaagtcggcatgcagcaggaagccttaaaaagc
cttgagcacttaaagctcaacgaagccgagttaccttggggtatcgccttatttcaagag
gattggcaccaaggcgtgatcgggattttggcctcgcgcattaaagacaaataccataga
cccgtgattgcctttgccgatgcaggcaatggtgaaattaaaggctcggcgcgttcgatc
aaaggcttgcatatgcgcgacttattggagttagtgaacactcgccatccgggactgatt
atcaaatttggtggtcatgcaatggcggcgggtttatcgctcaaagcgggcagttttgcg
atatttgctaaagcctatgatgatgcggtgcgtgagcagcttaaacctgagctgctaacg
ggcgagctttggtccgatggcgaactcactcccgcagagttgaatcttgaaatggctcag
ttactgcgtaatgcggggccttggggacaagctttcgaagagccgttattcgatggttac
tttacgatagtgcaacaacgtcttgtcggtgagcgccaccttaagctcgtactcgaaacc
caatgcggtactgtgatgctcgatgccattgcctttaatgtggatttgcacacttggcca
gatgcgacgattaatcatgcccatgttgtgtataaactcgatgtgaatgagtatcgcggc
aatttttcgctgcaacttatggttgagcaaatcgaagctatgtaa
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