Shewanella oncorhynchi: RA178_18880
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Entry
RA178_18880 CDS
T09381
Symbol
mrcB
Name
(GenBank) penicillin-binding protein 1B
KO
K05365
penicillin-binding protein 1B [EC:
2.4.99.28
3.4.16.4
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog00550
Peptidoglycan biosynthesis
sog01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RA178_18880 (mrcB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
sog01003
]
RA178_18880 (mrcB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sog01011
]
RA178_18880 (mrcB)
Enzymes [BR:
sog01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.28 peptidoglycan glycosyltransferase
RA178_18880 (mrcB)
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
RA178_18880 (mrcB)
Glycosyltransferases [BR:
sog01003
]
Polysaccharide
Bacterial polysaccharide (excluding LPS)
RA178_18880 (mrcB)
Peptidoglycan biosynthesis and degradation proteins [BR:
sog01011
]
Peptidoglycan biosynthesis and degradation
Glycosyltransferase/DD-Transpeptidase (Class A PBP)
RA178_18880 (mrcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transgly
UB2H
Transpeptidase
Motif
Other DBs
NCBI-ProteinID:
WMB75267
UniProt:
A0AA50KHU3
LinkDB
All DBs
Position
complement(4252116..4254434)
Genome browser
AA seq
772 aa
AA seq
DB search
MNDEVDMTTKTTKKSPASRRANHGRGLFRRIWSISWKLGLAGLAVVTFYSIYLDQIIAQK
FEGQKWHLPAQVFSRSMALYPGAAVSHPQMMAELKLLGYRKVANPRQVGEFSASSTRIEL
WRRPFLHPEGDQVEQRVMISFDSNGISSVTRVSDKRQLAVFHLEPVLLDRIITGDGEDRL
FVPTEEMPKSIVQALLLVEDRSFYEHHGVNPFAIARAAFVNISAGRTVQGGSTLTQQLAK
NFFLSSERSLLRKVREALMAVIIDFRYSKDEILEAYLNEVYMGQDKSRAVHGMGLASRFY
FGRPISELTISQQAFLVAAIKGPSYYNPWKYPDRIQERRDLVLRLLMDAGDLTTAEYKVA
VESPLGIRNLNKPAHQKLPSFFALVKQEVNERYGDALLKQSGVKIYTTLDPMAQEAAEIA
VTQTLKSLDKSNKSLQIGMVVTDKYTGGIAAMVGDKTPGFDGFNRAVEIRRPIGSLIKPF
VYATALAPNSQFTLATPLKDQPITLKSEQGKTWSPQNFDKKFSGQVPLLTALKKSMNVPT
VNLGIAVGVDAVATTLAKSGWQEPLNEYPSMLLGAVNGSPLMVAQVYQTLADSGVYRKLT
TVTAVLDSDKNPLPVTRLPKEQAIAPETDFLIQFAMQQVVNTGTATRLGNAFPGVGLAGK
TGTSNDSRDSWFAGFDERNVAAIWVGRDDNGKTSLYGSSGAMAVYLAFLKERPPISLRSI
PVNGVVKGFFDRDTGVAKESTCSNVDALPALAATYRPVNNCGDPLQWWQKIF
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgaagtagatatgacaactaagacgacaaaaaaatcacccgcttcccgtcgg
gctaatcatggccgcggtttatttcgacgaatttggtctatcagttggaaattaggcttg
gctggattagctgtagtgactttctacagcatttatcttgatcaaattattgcgcaaaaa
tttgaaggccaaaaatggcatttgccagcgcaggtgtttagtcgttctatggcgctgtac
cccggtgcggcagtcagccatccgcaaatgatggctgagcttaagttgctcggctatcgc
aaagtcgctaacccacgccaagtgggagagttttcggcatcgagcactcgtattgaattg
tggcgtcggccgtttttgcatccagaaggcgatcaagtcgaacaaagagtcatgatcagc
tttgacagcaatggcatcagttcggtcactcgagtctcagacaagcgtcaacttgccgta
ttccaccttgagccagtattgctcgaccgcattattactggcgacggtgaagacaggctg
tttgtgccgaccgaagaaatgccaaagtcgatcgtgcaggcgttactgctggtggaagat
cgtagtttttatgaacaccatggtgtgaatcccttcgcgattgcgcgcgcggcttttgtg
aacatcagcgccggtcgcactgtgcaaggtggctcgacgttaactcagcagttagcgaaa
aactttttcctttcgagtgagcgttccttgctgcgtaaggttcgcgaagccttaatggcg
gtcattattgattttcgttacagcaaagacgaaatcctcgaagcgtatcttaacgaagtg
tatatggggcaggataaatcccgcgccgtccatggtatggggttggcctcacgtttctat
ttcggccgtcctatcagtgagttgactatctcccagcaggcattcttagtggctgcgatt
aagggaccgtcttactacaatccatggaaatatccggatcgtattcaagaacgccgtgat
ctggtattgcgcttgttaatggatgcgggggatttaaccacggcggagtacaaggtggcg
gtagagtcacccttagggatccgtaatctgaataaaccagcacatcaaaaattaccttct
ttcttcgccttggtaaaacaggaagtgaacgagcgttatggcgatgcgctattgaagcaa
tctggggtgaaaatctataccacgcttgatcctatggcccaagaagccgccgaaattgcg
gtgactcaaaccctcaagagcttagataagagcaataaatcattgcagattggtatggtc
gtgaccgacaaatacacgggcggtatcgcggctatggtcggcgataaaaccccaggattt
gatggctttaaccgcgcagttgaaattcgtcgtcctattggctcgttaattaagcctttt
gtgtatgctacggctttggcacctaatagccaatttaccttagcgacccctcttaaagat
caacctattaccttaaaaagcgagcaaggtaagacatggtcaccacaaaactttgataag
aagttcagtggtcaggtgcctttgttaacggcattgaaaaagtcgatgaacgtaccgacg
gtaaatcttggaattgctgtgggtgtggatgcggtcgccacaacattggctaaatcgggt
tggcaggagccgttaaacgagtatccctccatgttactcggcgccgtcaatggctcgcca
ttaatggtagcgcaagtgtaccaaaccttagctgatagcggtgtttaccgtaagttaacc
acagtgaccgctgtgctagattctgataagaacccattgccagtgacgcgattgcctaaa
gagcaagctatagcacctgagacagatttcttaattcaatttgctatgcagcaagtggtg
aatacgggaacggcgacgcgtttaggtaatgctttccctggcgttggacttgcgggtaag
actggcaccagtaacgacagccgcgactcttggtttgcgggctttgatgagcgtaatgtc
gccgccatttgggttggtcgtgacgataacggcaaaaccagtttgtatggtagcagtggc
gccatggccgtatatcttgccttcttaaaggaacgtccacctattagtctgcgctcaatt
ccagtgaacggcgtagtgaagggcttttttgaccgagatacaggtgtggctaaggaatcc
acttgcagcaatgtcgatgcgcttccggcattagctgcgacctatcgtccagtgaataac
tgcggcgaccctttgcagtggtggcagaaaattttctag
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