Shewanella oncorhynchi: RA178_19140
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Entry
RA178_19140 CDS
T09381
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sog03021
]
RA178_19140 (rapA)
Transcription machinery [BR:
sog03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
RA178_19140 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
AAA_34
Motif
Other DBs
NCBI-ProteinID:
WMB72506
UniProt:
A0AA50KD67
LinkDB
All DBs
Position
4314386..4317292
Genome browser
AA seq
968 aa
AA seq
DB search
MPFALGQRWISDTESELGLGTVVQVEGRMVTVLFPATGENRMFSRAEAPLTRVIYNPGDS
VESHEGWSLAVSELTEKDGIVIYHGIHSETGEQATLRETLLNHNIRFNKPQDRLFAGQID
RLDRFGVRYQCQMLRHKLASSDLLGLQGPRVGLIPHQMWIAHEVGRRYAPRVLLADEVGL
GKTIEAGLIIHQQLLTGRAERILIIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAYAD
HDNPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRAYQVVEAL
SEVIPGVLLLTATPDQLGHESHFARLRLLDPNRFYDYDAFLAEEDSYKDVAIAAEALAGN
AKLPDAAINSLTELLGEKDISPSIRLIQADGIDAEVQQAARSELLQELLDRHGTGRVLYR
NSRASVKGFPKRFFNAYPHAMPDQYQTAARVSGMMGGHKSLEAKAAQALSPEKLYQEFED
NSASWWKFDPRVDWLIEFLKSHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMS
IIERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDR
IGQKNDIQIHLPYLEDTAQERLMQWYHQGLNAFELTCPSGHVLYSEFAEDLLNVLVGDDS
DELTNLLNHTQSRYKELKHAMEQGRDKLLEINSHGGEKALAIVNRLAQSDGDTHLIGSVI
RLWDIIGVDQEDKGENSIILRPSEHMMFPTYPGLPEDGVTVTFDRDTALSRDDIALITQE
HPLVQTGLDLITGSETGTTSVAILKNKALPAGTLFLELIYMADASAPKSSQLYRYLPPTP
IRVLLDKNGNDLSAKVDYASFDKQLSAVNRHIGGKLVTASQPILHPLFAKGEEYAQVVVD
EMVAQAREKMTQQLSAELDRLESLKAVNPNIREEELEYLRNQMQELNTYLDASQLQLDAI
RMVLVSHV
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccgttcgccttaggtcaacgttggataagtgataccgagtcagagcttggtttagga
actgtggttcaagtagaaggccgtatggtcactgtattattccctgccacgggtgagaac
cgcatgttctcccgagcagaagcccctctgacacgcgttatatacaatcccggcgattcg
gttgaaagccatgaaggctggagccttgcggtcagtgaattgaccgagaaagacgggata
gtgatctatcacggcattcacagtgagacaggcgagcaagcgacactgcgtgaaaccctg
ctgaaccacaatattcgtttcaacaaaccccaagaccgtttatttgctggccaaatcgat
cgcctcgaccgttttggtgtgcgttatcaatgccaaatgttgcgccacaaactggcctca
tcggatttgctgggtctgcaaggtccacgtgttggacttattccacatcaaatgtggatt
gcccatgaagtcggccgtcgctatgcaccgcgtgtactgttagccgatgaagtgggttta
ggtaaaaccattgaagcaggtctgattattcaccaacaactgctgaccggccgcgccgaa
cgcattctgattatcgtgcccgatactctgcgccatcagtggttagtggaaatgctgcgc
cgctttaatctgcgcttttcggtattcgatgaagaccgttgtgtggaagcctatgccgat
catgacaatcctttctacacagaacagttagtgatttgttcactcgaattactgcgtaag
aaaaaacgtcttgatcaagccctagatgccgattgggatctgttagtcgttgacgaagcg
caccacttagaatggaccgaagaagcgccaagccgcgcctatcaagtggttgaagcatta
agcgaagtcatcccaggcgttttgctgttaaccgcaacgccggatcaacttggccatgaa
agtcacttcgcccgtttgcgtctgctcgatccgaatcgtttctacgattacgatgctttc
ttagctgaagaagacagttataaagacgtcgccattgccgccgaagccttggctggcaac
gctaaattacccgatgccgccatcaacagcttgaccgaattactgggcgagaaagacatc
agcccaagtattcgtttaatccaagccgacggtattgatgccgaagtacaacaggccgcc
cgcagcgaattactgcaagaattactcgaccgtcacggtactggccgcgtgttataccgt
aacagtcgcgcctcagtaaaaggctttcctaagcgtttctttaacgcttacccacacgcc
atgccagatcaatatcaaactgcagcacgcgtcagcggcatgatgggcggacacaagtca
ttagaggcgaaagcggcgcaagccctgagccctgaaaaactgtatcaagaatttgaagat
aacagcgccagttggtggaagttcgatccccgtgtggattggttaattgagttcttaaaa
tcccaccgcagcaaaaaagtgctgatcatcgccagccaagcggaaacggcactgagctta
gaagaagccctgcgcactcgcgaagggattcaagcgacggtattccacgaaggcatgtcg
attatcgagcgcgataaagccggcgcttactttgcccaagaggaaggcggcgcacaggcg
ctgatctgttctgaaattggttctgaaggtcgtaacttccagtttgccagccacttagtg
ctgttcgatctgccgctaaaccccgatctattggaacagcgaatcggtcgtttagaccgt
atcggccagaaaaatgatatccaaattcacttgccataccttgaagatactgcccaagaa
cgtttgatgcagtggtatcaccaagggctaaatgcctttgaactcacttgtccgagtggt
catgtgctttacagtgaatttgccgaagatctgctaaacgtgcttgtgggtgatgacagc
gatgagctgacaaacctgctcaatcacacccagagccgttataaagaactcaagcacgcc
atggagcaaggccgcgataagctgctggaaatcaactcacacggcggcgagaaggcactg
gcaatcgtcaaccgccttgcccaaagtgacggtgatactcatttaatcggctcagtgatc
cgtctgtgggatattatcggtgttgatcaagaagataagggtgaaaactcgattattctg
cgaccgagtgagcacatgatgttcccaacttatcctggcttgccagaagatggcgtaaca
gtgacctttgatcgtgacacagcgttatcacgcgatgatattgcgctgatcacccaagag
catccgctggtgcaaacggggctagatctgatcacaggttctgaaactggcaccaccagc
gtcgcaattctaaagaataaagccctgccagcaggcaccttattcttagaactcatctac
atggccgatgcttctgcacctaagtcgagccagttgtaccgttatttaccgcctaccccc
attcgtgtgttgctggataaaaacggtaacgacctatcggctaaagtggattacgccagt
ttcgataagcaattaagcgcggtgaatcgtcacattggcggcaagttagtcacggcatct
cagcctattttgcatccactatttgctaagggtgaagaatatgctcaagtggttgtcgat
gaaatggtcgcccaagccagagagaaaatgactcagcaactgagcgcagagcttgatcgt
ttagagtcactcaaggcggtgaaccccaatatccgtgaggaagaattggaatacctgcgc
aatcagatgcaagagttaaacacttatctagatgccagccagttacaactcgatgcgatc
cgtatggtgctcgtcagccacgtatag
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