Shewanella oncorhynchi: RA178_19580
Help
Entry
RA178_19580 CDS
T09381
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog03420
Nucleotide excision repair
sog03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RA178_19580 (uvrD)
03430 Mismatch repair
RA178_19580 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sog03400
]
RA178_19580 (uvrD)
Enzymes [BR:
sog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RA178_19580 (uvrD)
DNA repair and recombination proteins [BR:
sog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RA178_19580 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
RA178_19580 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
WMB72590
UniProt:
A0AA50KCR2
LinkDB
All DBs
Position
complement(4409056..4411224)
Genome browser
AA seq
722 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVAGTNMGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQV
RLIKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPLEQNLLKIYQVYQES
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQDRFKHILVDEFQDTNAIQYAWIRVLAGQT
ANVMIVGDDDQSIYGWRGAQVENLHRFLKDFPSATTIRLEQNYRSKGNILKASNALIANN
PERMGKELWTDEADGDPISLYCAFNEMDEARFIVGRINDWHEKGGNLSDCAILYRSNAQS
RVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKDDDAAFERVVNTPPRGIGD
RTLDILRSTARQHELTLWQASVRLLDEKVLAGRAANSVRGFMDLIMTMREDTQDMVLYRM
ADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMPEELEDMGELNGFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPSKMALEEGDRLDEERRLCY
VGMTRAMEKLYITYAESRRIYGREDYARPSRFIKEIPPQYVDEIRLKAQVSTPMANNRFS
AQKSAATNDTGFNVGQRVNHPKFGEGKVTNFEGSGAQGRVQVSFTDFGSKWLVVAYARLE
AL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttactagacggcctgaatgataagcagcgcgaggctgtcgcggca
ccgcaatctagcatgttagtgttggcgggcgcgggcagtggtaaaactcgggtgttgacc
caccgcattgcgtggctgatgcaggttgaacagcagagtccttactcgattcttgcggtg
acgtttaccaataaagctgcggctgagatgcgcgagcgagttgaaaaagtcgctggcacc
aatatgggccgcatgtggattggcactttccacggcttggcgcatcgcttgttgcgcact
cacttccaagatgcgggtttaccgcaaagtttccaaatcctcgattctgacgatcaagtg
cgcttgatcaaacgtattcttaaaagcttgaatttggatgagaaacaatatcctccacgc
caagctcagggttatatcaatggtaaaaaagaccaaggattacgccctaaacatatcgat
gcgggcggttttccgcttgagcagaatctgctaaaaatctatcaggtttaccaagagtct
tgtgaccgcgctggtttagtcgattttgccgaaatcctattacgtgcccatgagttatgg
ctcaataagccgcacttgttggcccattatcaagacagattcaaacatattttggtggac
gagttccaagataccaacgcgatccaatatgcgtggatccgcgtgcttgccggtcaaact
gccaatgtgatgatagtgggtgatgacgaccaatcgatttacggttggcgcggtgctcag
gttgaaaacctacaccgattcttaaaagatttcccgagtgcgaccacgattcgcctcgag
caaaactatcgctcgaagggcaatatccttaaagcgtccaacgccttaatcgccaataac
ccagaacgtatgggcaaagagttgtggacggatgaagccgatggcgatccgatttcgctc
tattgcgcctttaatgaaatggacgaggcgcgctttattgtcggtcgaattaatgattgg
cacgaaaagggcggcaacctcagtgattgtgcgattttatatcgttctaacgctcagtcg
cgggtattggaagaagccttattacacaaagggttagcctatcgcatctacggcggttta
cgcttcttcgaacgccaagaaattaaagatgccatgggttacctacggctgattaataac
aaagacgacgatgcggcgtttgagcgtgtagtgaatacgccgccccgtggcattggcgat
cgcactttagatattttgcgctccacggcgcgccagcatgagttaaccctgtggcaggcg
agtgtgcgtttgctcgacgagaaagtgcttgcgggtcgcgcagcaaattctgtgcgtggt
ttcatggacttaatcatgacgatgcgtgaagacacccaagatatggtgctgtatcgcatg
gccgatacagtgatccaagcttcgggccttaaggccatgtatgaagccgaaaagggcgaa
aaagcccacgctagaatcgaaaacttagaagaactcgtcacggcggcgcgtactttcgaa
atgccagaagagctggaggacatgggcgaacttaacggtttcctatcccacgcggcgctc
gaagcaggcgaaggccaagccgatgcctttaccgatgcggtgcagctaatgacgctgcat
tctgctaaagggttagagttcactatggtgttcatggcgggtgtcgaagaagggatcttc
ccgagtaaaatggcgctcgaagagggcgatagactcgatgaagaacgccgtctctgctat
gtgggcatgacccgcgccatggaaaaactctacattacctatgcggaatcacgccgtatt
tatggccgcgaagattacgcgcggccatcgcgttttatcaaagagatcccgccgcaatat
gtggatgaaatccgtcttaaggcgcaggtttcaacgccgatggcgaataatcgtttcagc
gcccaaaaatcggctgccacaaacgatacgggttttaacgtcggccaacgagtcaatcat
cctaaatttggtgaaggtaaagtgaccaactttgagggcagcggtgcccaagggcgagtt
caagtgagctttactgactttggcagcaagtggttagtggtggcttacgctcggttagag
gcgctttaa
DBGET
integrated database retrieval system
