KEGG   Shewanella oncorhynchi: RA178_19895
Entry
RA178_19895       CDS       T09381                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
sog  Shewanella oncorhynchi
Pathway
sog03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sog00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RA178_19895 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sog03021]
    RA178_19895 (rho)
   03019 Messenger RNA biogenesis [BR:sog03019]
    RA178_19895 (rho)
Transcription machinery [BR:sog03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     RA178_19895 (rho)
Messenger RNA biogenesis [BR:sog03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RA178_19895 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB NACHT AAA AAA_22 AAA_25 Spore_III_AA S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: WMB72648
UniProt: A0AA50KD15
LinkDB
Position
4492285..4493550
AA seq 421 aa
MNLTELKDTPISDLVSLAENMKLENMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQD
GFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVNEVN
FDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPP
KAGKTLLLQGIAQSISYNNPEVVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTQEELQKMWILRKILNPMDEVSAMEFLIDKLAMTKTNEEFFTAMKRTK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaacttaactgaattaaaagacacgccgatttctgacctagtctcgctagctgaaaat
atgaagctcgaaaatatggcccgcgctcgcaagcaggacattattttctcaatccttaaa
gcccacgcaaaaagtggagaagacattttcggtggtggggtattagaaatactccaagac
ggtttcggcttcttacgcagctcagacggttcttatttagctggtccagatgacatctat
gtctcaccaagccaaattcgccgcttcaacatgcgaacgggtgataccatttttggtaaa
attcgcccaccaaaagaaggcgagcgttattttgccctattgaaagtcaacgaagttaac
ttcgataaaccagaaaactcccgtaataaaatcctctttgaaaacttaaccccactccac
gcagaagaacgtatgcgtatggagcgcggcaacggctcaactgaagatattaccgcacgt
attctggatttatgctcaccgattggtaaaggtcaacgtggtttgatcgttgcaccacca
aaagccggtaaaacgctattacttcaaggtattgctcaaagcatcagctacaacaaccca
gaagtggtgttgatggtattactgatcgacgaacgcccagaagaagtaactgagatgcag
cgcctcgttaaaggcgaagttatcgcatcaaccttcgatgagccagccagccgccacgtt
caagttgccgaaatggtgattgaaaaagcaaaacgtttggttgagcacaagaaagacgtc
gttatcttactcgattcgattacccgtttagcccgtgcctataacactgttatcccatca
tcgggcaaagtgttaaccggtggtgtggatgctaacgccctgcaccgtccaaaacgcttc
tttggtgcggcacgtaacatcgaacacggtggcagcttgaccattatcgccacagccttg
gttgatacgggttctaagatggacgaagtgatctacgaagaatttaaaggtacaggtaac
caagagctacatttgtcacgtaaagcggcagaaaagcgcgtgttcccagccattgatttc
aaccgcagcggtacgcgtcgcgaagaaaaactcacgactcaagaagaactgcaaaaaatg
tggatcctgcgtaagatcctcaatcctatggatgaagtcagcgcaatggaattcttaatc
gataaattggcgatgaccaagactaacgaagagttctttaccgccatgaaacgcactaag
tcttaa

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