Shewanella oncorhynchi: RA178_21200
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Entry
RA178_21200 CDS
T09381
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sog03021
]
RA178_21200 (rpoH)
Transcription machinery [BR:
sog03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RA178_21200 (rpoH)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Fe_dep_repress
UCR_14kD
2Fe-2S_thioredx
Motif
Other DBs
NCBI-ProteinID:
WMB72884
UniProt:
A0AA50KCW3
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Position
complement(4817776..4818633)
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AA seq
285 aa
AA seq
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MTFQTQSMALTVPQGASSLEAYIHSVTSISMLDAEAEYELAKRLQETGDLQAAKQLIMSH
LRFVVHVAKGYSGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV
LKNWRIVKVATTKAQRKLFFNIRKAKKRLGWFSDAEVTMVAENLGVSKADVTEMESRMAA
QDPAFDLTNDQDEEHDFAPVHYLEDHSSDLAENIENDNWESNAQGRLLSAIKTLDERSQH
ILRARWLDDDKTTLQELAETYQVSAERIRQLEKNAMNKLKACMEA
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgacctttcaaacgcaatcaatggcactgacagtcccacagggcgccagtagtctagaa
gcttatatccattcagtgactagcatcagcatgctggacgctgaggctgagtatgagtta
gccaagcgtttacaggaaactggtgatctacaagctgcgaagcaactgattatgtcgcac
ttacgttttgtagtgcacgttgctaaaggctattcaggctatggtttgccacaggcagac
ctgatccaagagggcaacataggcttgatgaaagcggttaaacgcttcgatcccgatgtt
ggcgtgcgtcttgtgtcttttgctgtgcactggatcaaagctgaaattcatgaatatgtg
ctgaaaaactggcgcattgttaaagtcgcgaccactaaagcacaacgtaagttgttcttt
aatatccgtaaagcgaaaaaacgcttaggttggtttagcgatgcagaagtcactatggtg
gctgagaatttaggtgtgtctaaggccgatgtgaccgaaatggaatcacgtatggcagcg
caagatccggcatttgatttaaccaatgatcaagacgaggagcatgattttgcccccgtc
cattatttggaagatcattcatcggatttagcggaaaatattgaaaacgacaactgggaa
tccaatgctcaaggtcgtttattatcggccatcaaaaccctagatgaacgtagccagcat
attctgcgcgctcgttggttagatgacgataaaaccacactgcaagaacttgcagagact
tatcaagtgtcggccgaacgtattcgccaacttgagaaaaatgccatgaacaagctaaaa
gcttgcatggaagcctaa
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