Sulfurisphaera ohwakuensis: D1869_02000
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Entry
D1869_02000 CDS
T06310
Name
(GenBank) exosome complex protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
soh
Sulfurisphaera ohwakuensis
Pathway
soh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1869_02000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soh03019
]
D1869_02000
Messenger RNA biogenesis [BR:
soh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
D1869_02000
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
D1869_02000
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
QGR16096
UniProt:
A0A650CEB7
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All DBs
Position
complement(311503..312330)
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AA seq
275 aa
AA seq
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MSITPSNQNITSLLKKESILNALERGIRLDGRKNSDYRPISITLNYAKKAEGSALVKLGD
TMVLAGVKLEEEEPFPDTPNQGNLVVNVELLPLAYETFEPGPPDENAIELARVVDRSLRD
SKAVDLSKLVIIPGKKVWTAWVDVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEGDNV
KIIKEEKTDVTPIAYPVVTVTVAKIGKYLVVDPSLDEESIADVKISFSYVQDGRIVGMQK
SNFGSLSLQEVDVAESLARSASQKLFEELKKQINM
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatcacgccttctaatcaaaacataacttccttgcttaaaaaagaaagtatatta
aacgcattagaaagaggtattagattagatggaagaaagaatagtgattatagaccaatt
tctattacactcaattatgctaaaaaagccgaaggttcagctttggtaaaactaggagat
acaatggttttagccggtgtaaaattagaggaggaagaaccgtttccagataccccaaac
caaggaaacttagtagttaacgtagaactccttcctttagcttacgagacatttgagcca
ggaccaccagatgaaaatgctatagaattagctagagttgtggatagaagccttagagat
tcaaaagcagttgatctatctaaattagttattataccaggtaaaaaagtatggactgca
tgggttgatgtatatgttcttgattatggaggaaatgtattagatgcttgtactttagca
gcagttgcggctctatataatactaaacttcctaaagttgaaatagaaggagataatgta
aaaataataaaagaggaaaaaactgatgtaactccaattgcttatccagtagtcactgtt
actgttgctaaaataggtaagtatcttgttgtagatccaagtttagatgaagaaagcatt
gcagatgtaaaaatctcattctcttacgtacaagatggtagaatagtaggaatgcaaaag
agtaattttggaagcttaagcttacaagaagtagatgttgcagaaagtttagcaagatca
gcttcacagaaattattcgaagagcttaaaaagcaaattaatatgtaa
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