KEGG   Sulfurisphaera ohwakuensis: D1869_12440
Entry
D1869_12440       CDS       T06310                                 
Name
(GenBank) RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
soh  Sulfurisphaera ohwakuensis
Pathway
soh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:soh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    D1869_12440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:soh03019]
    D1869_12440
Messenger RNA biogenesis [BR:soh03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     D1869_12440
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     D1869_12440
SSDB
Motif
Pfam: ECR1_N FtrD-like S1 A2L_zn_ribbon Zn_ribbon_3 Zn_ribbon_NUD Zn_Ribbon_TF ECR1_N_2 OB_RRP5_4th HVO_2753_ZBP Zn_ribbon_NOB1 HypA DZR Cas12f1-like_TNB DUF3797 Prok-RING_1 DUF7130 C1_2 Zn_ribbon_PaaD Auto_anti-p27
Other DBs
NCBI-ProteinID: QGR17892
UniProt: A0A650CJ97
LinkDB
Position
complement(2237107..2237676)
AA seq 189 aa
MKKQGELLLPGDELSVIEEFMAGEGTYEYEGRVYASVVGKAFYDMINRKTNSISFKKPGL
LSIKKAKYVLGIVNGMKEDSALVSIYSIEDKIISVPITAYIHISQISNKYLNSITEALKV
GDVVRAKALNFSIPLPLTIKQKDLGVVFAKCSICGTKMIKKDEEHLRCPNCGNIETRKLA
LVTVKKGGN
NT seq 570 nt   +upstreamnt  +downstreamnt
atgaaaaagcaaggagaattactactaccgggtgacgaattaagtgttatcgaagagttc
atggccggtgagggaacttatgagtatgaaggaagagtttatgctagcgtagtcggtaaa
gcgttttatgacatgataaacagaaaaactaattctataagttttaaaaagcctggatta
ttatctataaagaaagctaaatacgtcctaggaatagttaatggaatgaaagaggattct
gcactagtaagtatttattcgatagaagacaaaattataagtgtacctattacagcgtat
attcatatttctcaaattagtaataaatatcttaatagtattactgaagcattaaaagta
ggagatgttgtaagagcaaaagcattaaatttcagcatacctcttcctttaacaataaaa
cagaaggatttaggcgtagtttttgctaaatgttctatttgtggtacaaaaatgattaaa
aaagacgaagaacatttaaggtgtccaaactgtggtaatattgagacaagaaaattagca
ttggttacggtgaagaaaggtggaaattaa

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