Streptococcus cristatus: I872_00035
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Entry
I872_00035 CDS
T02649
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
soi
Streptococcus cristatus
Pathway
soi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
soi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I872_00035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soi03400
]
I872_00035
Enzymes [BR:
soi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I872_00035
DNA repair and recombination proteins [BR:
soi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I872_00035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_22
RecG_dom3_C
AAA_16
TniB
Motif
Other DBs
NCBI-ProteinID:
AGK70148
LinkDB
All DBs
Position
5575..9066
Genome browser
AA seq
1163 aa
AA seq
DB search
MTLLDLFGRNKQIVDWKRQLQKKTRQLVMGLSASTKALAIASSLEEQEKILVITSSQNEA
ERLASDLISLLGEEKVYTFLADDTPLAEFVFSSQEKIFARLEAMNFLSDKEKNGIIIINV
AASRLLLPQPDIFKKSELILSVAKEYNLDKLVKSLSRNGYKKVSQVLSQGEYSLRGDILD
IFERSAQYPYRIEFFGDEIDGIRIFNPENQLSLENVEQILIEPVTDLLLTEEDYARGQKN
LEASLSTVIDPSLKSYLEEVLSSVREQYHHADIRKFLSFFYKKEWTILDYLPTHTPIFFD
DFQKIMDKHAQFELEVAHILTDDLQNSKALSNQQYFANNYQDYRKYKPATFFSNFHKGLG
NLKFDALYQFNQYPMQEFFSQFPLLKEEINRFRKSDYTVILQANSDSSLQSLHKTLQDYE
IHLDYIKEKDIHEKAVQLIEGNLVQGFNFVDEKIVLITEHEMIQKKIKRRIRRQNISNAE
RLKDYNELEKGDYVVHNIHGIGRYLGIETIEVSGVHRDYLTIQYQNADRISIPVDQINLL
SKYVASDGKAPKINKLNDGRFQKTKQKVQHQVEDIADDLIKLYAERSQLKGFQFSSDDQH
QVEFDNAFPYVETDDQLRSIQEIKKDMESDRPMDRLLVGDVGFGKTEVAMRAAFKAVNDH
KQVAILVPTTVLAQQHYTNFKERFNDFAVNIDVLSRFRSKGEQKETLEKLEKGQIDIIIG
THRLLSADVTFSDLGLLVIDEEQRFGVKHKEKLKELKKKVDVLTLTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTYVLENNLTVIRDAVLREIDRGGQVYYLYNKVDTIEQKVSEL
KELIPEASIGYVHGQMTEVRLENTLLDFVNGEYDILVTTTIIETGVDIPNANTLFIENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKTLTEVSEKRLEAIKGFTELGSGFKIAMRD
LSIRGAGNILGSSQSGFIDSVGFEMYSQLLEEAIAKKQGKETKRQKSNAEINLQIDAYLP
SDYISDERQKIEVYKRIREIDNRVNYEHLQDELIDRFGEYPDVVAYLLEIGLVKSYLDQA
FVALAERKQESVIIRFEKISQQIYLTQDYFEALSATNLKARIGEQKGLIEVVFDVRKKKD
FEILENLLNFGEKLVEIKNRKAE
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgacactacttgatctatttggtcgaaacaaacaaattgtagactggaagagacagtta
caaaagaagactaggcagttagtgatgggactttcagcttcaacaaaggctttggcgatt
gctagcagcttagaagagcaggagaaaatcctagtcatcacttcgagtcaaaacgaagca
gagcgtctagctagtgatttgatttctttgttaggagaagaaaaggtctatactttcttg
gcagatgatacacctttggctgagtttgttttttcatctcaagaaaaaatctttgctcgg
ttagaggccatgaattttttatcggacaaagagaaaaatgggattataatcatcaacgtt
gcagccagtcgtttattattgccccagcctgatatttttaaaaaatctgagcttatcctt
tctgttgctaaagaatataatcttgacaagctagtaaagtctttgtcaaggaacggttat
aaaaaagtttcgcaagttctcagccaaggagagtacagtctgagaggggatattctagat
atttttgaacgctcggctcaatatccttatcggatagagttttttggagatgagattgat
ggcataaggattttcaatcctgaaaatcagctttctcttgaaaatgtggaacagattttg
atagagcctgttacagatcttctattaacagaagaagattatgcaagaggacagaaaaat
cttgaagcgtctctttctacggttattgatccttctttaaaatcctatttagaagaagta
ttaagctctgttagagagcaatatcatcatgcagatattcgcaaatttctttcctttttt
tataagaaagaatggactattttagactatctaccaactcacactcctatattttttgat
gattttcaaaagataatggacaagcatgcccagtttgaattagaagttgcccatatcttg
acagatgatttacaaaatagtaaagcactgtcaaatcaacaatactttgcaaataactat
caggactatcgtaaatataaacctgctacatttttttctaatttccataaaggcttagga
aatctaaaatttgatgcactttatcaattcaatcaatatccaatgcaggaattttttagc
cagtttcctctcttaaaagaagaaatcaatcgctttaggaaatcggactatacggtaatc
ttacaggcaaattcagactcaagtttacaaagtttacataaaactttacaggattatgag
attcatttagattacatcaaggaaaaagacatccatgaaaaagctgtccagctcatagaa
ggaaatctagttcaaggatttaattttgtcgatgaaaaaatcgttttgattactgaacat
gagatgattcagaaaaaaatcaaacgtaggattcgtcgtcaaaatatttctaatgctgaa
aggttgaaagactataatgagctggaaaaaggcgactatgtggttcataatatccacggt
attggtcgctatttaggaattgaaacgattgaagtttcaggagttcatcgagattatttg
acgattcagtatcaaaatgcggatcgtatctccattccagtggatcaaatcaatcttttg
tctaaatatgtagctagcgatggaaaagcacctaaaattaacaagttaaatgatgggcgt
ttccaaaagaccaagcaaaaagtccagcatcaggttgaagacattgccgatgaccttatt
aaattatatgcagagcgtagtcaattaaaaggtttccaattttctagtgatgaccaacat
caagtagagtttgacaatgcctttccgtatgtggaaacagatgaccaactcagaagtatc
caggaaatcaagaaagatatggagagtgaccgtcctatggaccgactcttggttggagat
gttggttttgggaagacagaggtggctatgcgggctgcttttaaggctgtcaacgatcat
aaacaggtggctatcttggttccgaccactgttttagctcagcaacactacacaaacttt
aaagaacgtttcaatgattttgccgtaaatatcgatgttctcagccgttttagaagcaaa
ggggagcaaaaagagactctggaaaagttggaaaaagggcagattgatattattatcggt
acccatcgcctcctatcagcagatgtgacattttccgatttggggctactggtgatagat
gaagagcagcgcttcggtgtcaagcataaggaaaagttaaaggaactaaaaaagaaggtt
gatgttctgaccttgacggctacccctattccaagaacccttcacatgtcgatgttagga
attcgagatttatcggtaattgaaaccccaccgacaaatcgttatccagtccaaacctat
gttttagagaataacctcactgttattcgagatgcggttttacgtgaaatagaccgaggt
ggacaggtttactacctttacaataaagttgacaccattgagcaaaaagtttcagaatta
aaagagttgattccagaggcttcaattggttatgttcatggacagatgactgaggtacgt
ttagaaaataccctcttagactttgttaatggcgaatatgatattttagtcacaacaacg
attattgaaacaggtgtcgatattccaaatgcaaatactctctttatcgaaaatgctgac
cacatggggctgtcaaccttgtatcaacttcgtggtcgggttggccgcagcaatcgaatt
gcctatgcctatcttatgtatcgtccagataagactctaactgaagtttcagaaaaaaga
ctagaagccattaaaggatttactgagttgggatctggatttaagattgcgatgagggat
ttgtctatccgaggagcaggaaatattttaggaagttcacagtcaggtttcattgattct
gtaggatttgaaatgtattctcaacttttggaagaagccattgctaagaagcaaggtaag
gaaaccaagcgtcaaaaaagcaatgctgaaatcaatcttcagattgatgcctatcttcca
agtgattatatttctgatgaacgtcagaaaatcgaggtttacaagagaattcgtgaaatt
gacaatcgtgtaaactatgaacatctacaagatgaattgattgaccgctttggagaatat
ccggacgtagtggcttacctattagagattggcttagtcaagtcctatcttgatcaggct
tttgttgcgcttgctgagcggaagcaagagtctgtcattattcgttttgaaaaaatctct
cagcaaatctatctgactcaggattattttgaagccttgtcagcgacaaatttaaaagct
cgaattggtgagcagaaaggcttgatcgaagtcgtttttgatgttcggaagaaaaaagat
ttcgagattttggaaaatttgctgaactttggtgaaaaactggtagaaatcaagaatcga
aaagctgaataa
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