Streptococcus cristatus: I872_07020
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Entry
I872_07020 CDS
T02649
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
soi
Streptococcus cristatus
Pathway
soi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I872_07020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soi03019
]
I872_07020
03016 Transfer RNA biogenesis [BR:
soi03016
]
I872_07020
Enzymes [BR:
soi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
I872_07020
Messenger RNA biogenesis [BR:
soi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I872_07020
Transfer RNA biogenesis [BR:
soi03016
]
Prokaryotic type
tRNA degradation factors
I872_07020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
RNase_II_C_S1
Penicillinase_R
HVO_A0114
CSD
S1_RRP5
Drf_FH3
Motif
Other DBs
NCBI-ProteinID:
AGK71488
UniProt:
A0ABM5NKY3
LinkDB
All DBs
Position
complement(1418567..1420918)
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AA seq
783 aa
AA seq
DB search
MKEEIIEYLKEKQQASVHELAAALGKESSKDFSSLVKTISQMERKHQLRFDDKGRIELYE
KKKQERLTLKGVFHAHKNGFGFVTLNEEEDDLFVSRNDVNHAIDGDTVEVVITKVADRIK
GTSAEAKIIDILEHSLTSAVGQLVLDEEKPKYAGYIRSKNQKIRQPIYVKKPAMVLDGTE
VLKVAIDKYPTKKHDFFVASLVDVVGHVNDPGIDVLEVLESMDIVSEFPEKVLEEAKRVP
DAPTESDLEGRLDLREEITFTIDGADAKDLDDAVHIKHLKNGNFELGVHIADVSYYVKEG
SELDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEIDAKGRVVKHT
ITQSIIKTTFRMTYSDVNDIIAGDQEKVEQFKDIVPSIDSMVRLHEILESMRFKRGALNF
DTNEAKIIVNKEGRPVDIVLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIHEEP
KAEKVQKFIDYASSFGIRIYGTASSMSQQVLQDIMEAVKDQPYEDVLSMMLLRSMQQARY
SEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVRDYGKSKEIAEHFEQVIPEIASQSSS
RERRAIEAEREVEAMKKAEYMEEFVGEEFDGVVSSVVKFGLFVELPNTVEGLIHVTNLPE
FYSYNERTMTLQGEKSGVVFKVGQQIRIKLVRADKATGEIDFEYLPSEFDLVDKTSKTGR
GKSGRNRRREDDKRSHSSKKEKGYRDKKDKKSKKGKSQKAFYKELVKKGAKHGKGRRKGR
RAK
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagaaattatagaatatttaaaagaaaagcagcaggctagcgtacatgagctg
gcagctgctttggggaaagagtcttccaaggactttagtagcttggtcaagaccatctcc
cagatggaaagaaagcatcagcttcgctttgatgacaaggggcggattgagctttatgag
aagaaaaagcaggagcgtctgacgctcaagggtgtttttcatgcccacaagaatggcttt
ggctttgtcaccctgaatgaagaagaggatgatctttttgtcagccgtaatgatgtcaat
catgctattgatggcgatacggtggaagtggtcattaccaaggtagcagatcgtatcaag
ggaacatcagctgaagctaagattattgatattttggagcacagcctgacgtcagcggtt
ggccagctggtgttagatgaggaaaagcccaagtatgcgggctatatccgctcgaaaaat
cagaaaatccgtcagcctatttatgtcaaaaaaccagccatggttttggacggcacagag
gtgctcaaggtcgctattgacaaatatccgaccaagaaacacgatttctttgtggccagt
ctggtcgatgtggttggtcatgtaaacgatccaggtattgatgtactggaagtgctagag
tcgatggatattgtctccgaatttccagaaaaggtcttggaagaagccaagcgagttcca
gatgcaccgacagaaagtgatttggaaggacgtttggacctgcgtgaagagattaccttc
accatcgatggagcggatgccaaagacttggacgatgctgtccatatcaagcacttgaaa
aatggtaactttgagctaggcgtccatatcgcagatgtgtcctactatgtcaaagaaggc
tctgagctggacaaggaagccctcaatcgagcaacctcagtctatgtgaccgaccgcgtg
gtgcctatgctgccggagcgcctgtccaatggtatctgctccctcaatcccaatgtggac
cgactgacccagtcggctattatggagattgatgccaaggggcgcgtggtcaagcatacc
atcacccagtctatcattaaaacgacctttcgcatgacttatagcgatgtcaacgacatc
atcgcaggtgatcaggaaaaagttgagcagttcaaggatattgtgcctagtattgacagc
atggtgcgtctgcatgagattctggaaagcatgcgatttaaacgcggtgcgctcaacttt
gacaccaatgaagctaaaatcatcgtcaacaaggaaggccggccagtggatattgtcctg
cgtcagcgggggattgctgagcgcatgattgagtcctttatgctggtggcgaatgagacg
gtggccgagcattttgctaagttaaatctgcctttcatctatcggatccacgaggagcct
aaggcggagaaggtgcagaagtttatcgactatgcctctagctttgggattcggatatac
gggacggctagctctatgagtcagcaagttctgcaagatattatggaggcggtcaaagac
cagccttatgaggatgttctgtccatgatgcttctgcgctccatgcagcaggctcgctat
tctgagcacaatcacggccactatggtttggcagcggagttttatacccacttcaccagt
ccgattcgccgctatccagaccttctagttcaccggatggtacgggattatggcaagtct
aaggaaatagcagagcattttgaacaagtgattccagagattgccagtcagtcttccagc
cgagagcgtcgagctatcgaggccgagcgtgaagtcgaagccatgaagaaggctgagtat
atggaagaatttgttggggaagagtttgacggcgtggtttcaagtgtggtcaagtttgga
ctcttcgtcgaactgcctaatacggtcgagggcttgattcatgtcaccaacttgccagaa
ttttacagctacaatgagcggactatgactctgcaaggagaaaagtctggtgtggtcttt
aaggtcggtcagcagattcggatcaagctggtccgagcggataaggctacgggcgagatt
gactttgaatacctgccaagtgaatttgacctagtagacaagaccagcaagactggcaga
ggcaagtcaggtagaaatagacgccgtgaggatgacaagcgcagccattcttccaaaaaa
gaaaaaggctacagagataagaaagacaagaagtccaagaaaggcaagagccagaaggca
ttttacaaggaactagtcaagaaaggagccaagcatggcaaagggagaaggaaaggtcgt
cgcgcaaaataa
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