Shinella oryzae: K6301_00480
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Entry
K6301_00480 CDS
T08112
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
soj
Shinella oryzae
Pathway
soj03030
DNA replication
soj03410
Base excision repair
soj03420
Nucleotide excision repair
soj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K6301_00480 (polA)
03410 Base excision repair
K6301_00480 (polA)
03420 Nucleotide excision repair
K6301_00480 (polA)
03440 Homologous recombination
K6301_00480 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
soj03032
]
K6301_00480 (polA)
03400 DNA repair and recombination proteins [BR:
soj03400
]
K6301_00480 (polA)
Enzymes [BR:
soj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K6301_00480 (polA)
DNA replication proteins [BR:
soj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K6301_00480 (polA)
DNA repair and recombination proteins [BR:
soj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
K6301_00480 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K6301_00480 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
HHH
NYN_YacP
IMS_HHH
Motif
Other DBs
NCBI-ProteinID:
UPA24735
LinkDB
All DBs
Position
complement(94421..97408)
Genome browser
AA seq
995 aa
AA seq
DB search
MKKGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNMLWKLLKDARNTDVGVT
PTHFAVIFDYSSKTFRNELYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA
DDLIATYARLAEADGADVTIVSSDKDLMQLVTQNVSMYDSMKDKQISIPEVIEKWGVPPE
KMIDLQSLTGDSTDNVPGVPGIGPKTAAQLLEEYGDLDTLLARAEEIKQVKRRENIVANR
ELVLLSRQLVTLKTDTPLDMTLDELILHPQDGPRLIAFLKAMEFTTLTRRVAEACDCDAG
AIDAADVPVEWGAEAHGPDLDKGDVAGPALDLDGEETAAEAAATLLPTAGADANTPTALA
RGRAERFSAAPIDHTAYETVRDLASLDRWIAAARETGLVGFDTETTSLDAMQAELCGFSL
AVADNAKDPTGTVIRACYVPLNHKTGVGDLLGGGLAEGQIPIRAALERLKALLEDPSVLK
VAQNLKYDYLVMRRHGITMQSFDDTMLMSYALDAGAGTHGMDTLSERWLGHKPIAYKDVA
GSGKGAQTFDMVDIARATAYAAEDADVTLRLWHVLKPRLAAERMTTVYERLERPLVPVLA
RMEERGITVDRQVLSRLSGELAQGAARFEEEIYELAGERFNIGSPKQLGDILFGKMGLTG
ASKTKTGQWSTSAQVLEDLAAQGIPLPRKIVDWRQLTKLKSTYTDALPGFVHPQTKRVHT
SYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFVSTPGNKLVSADYSQIELRVLAHV
ADIPQLKQAFADGIDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQL
SIERSEAGEYIKKYFERFPGIKDYMDSTKAFAREHGYVETIFGRRAHYPEIKSSNPSVRA
FNERAAINAPIQGSAADIIRRAMVKMEPALAAAGLSARMLLQVHDELIFEVEDGEVEKTI
PVIVDVMENASMPALSMKVPLKVDARAAHNWDEAH
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaggtgatcatctcttcctcgtcgacggctcgggcttcattttccgcgccttc
cacgccatcccgccgctcaaccgcaaatcggacgggctgccggtcaatgccgtctcaggt
ttctgcaacatgctgtggaagctcttgaaggatgcgcgcaacaccgatgtgggcgtgacg
ccgacccacttcgctgtgatcttcgactactcctcgaagaccttccgcaacgaactttat
gaccaatacaaggcaaaccgcaccgcgccgccggaagatctcattccgcagttcggcctc
atccgccatgcgacacgcgccttcaacctgccctgcatcgagaaggaaggctacgaggcc
gacgatctgatcgccacctatgcccgccttgccgaagccgacggggccgacgtcaccatc
gtctcatccgacaaggacctcatgcagctcgtgacacagaacgtctcgatgtacgacagc
atgaaggacaagcagatctccatccctgaagtcatcgagaagtggggcgtgccgccggaa
aagatgatcgacctccagtcgctgacgggcgattcgaccgacaacgtgccgggcgtgccc
ggcatcgggccgaagaccgccgcccagctcctggaagaatacggcgacctcgacacgctg
ctggcccgcgccgaagagatcaagcaggtcaagcgccgcgagaacatcgtcgcgaaccgc
gaactcgtcctgctctcgcgccagctcgtgacgctcaagacggatacgccgctcgacatg
acgctcgacgagctgatcctccacccgcaggacggcccgcggctgatcgccttcctcaag
gccatggaattcaccacgctcacccgccgcgtcgccgaagcctgcgattgcgatgcgggc
gccatcgatgcggccgatgtgccggtcgaatggggtgcggaagcccatggccctgacctc
gacaagggcgatgtcgccggcccggcgcttgatctcgacggcgaggagacggcggccgaa
gcggccgcgacgctgctgcccaccgccggtgcggacgccaacacaccgaccgcgcttgcc
cgcgggcgcgccgagcgcttctccgcggcgccgatcgatcatacggcctatgagacggtg
cgcgatctcgcaagcctcgaccgctggattgccgccgcgcgcgagaccggcctcgtcggc
ttcgacacggagacgacctcgctcgatgcgatgcaggccgagctctgcggcttctcgctt
gccgtcgccgacaatgcgaaggacccgaccggtacggtcatccgcgcctgctacgtgccg
ctcaatcacaagaccggcgtcggcgacctgctcggcgggggcctcgccgagggccagatc
ccgatccgcgcggcgctcgaacggctgaaggcgctgctggaggacccgtcggtcctgaag
gtcgcgcagaacctgaaatacgactaccttgtcatgcgccgccacggcatcaccatgcag
agtttcgacgatacgatgctgatgtcctatgcgctcgatgcgggcgccggcacgcacggc
atggatacgctttcggagcgctggctcggccacaagccgatcgcctacaaggacgtcgcc
ggttccggcaagggtgcgcagaccttcgacatggtcgatattgcccgcgccaccgcctat
gcggccgaggatgccgacgtgacgctgcgcctgtggcatgtgctgaagccgcgcctggcg
gcggaacgcatgacgaccgtctatgaacggctggagcgcccgctggtgccggtgctggcg
cgcatggaagagcgcggcatcaccgtggacaggcaagtcctgtcgcgcctttccggcgag
ctggcccagggggccgcccgcttcgaggaggaaatctacgaactggccggcgagcgcttc
aacatcggctcgcccaagcaactcggcgacatccttttcggcaagatgggcctgaccggc
gcttccaagaccaagaccggccaatggtccacctccgcacaggtgctcgaggacctcgcc
gcccagggcattccgctgccgcgcaagatcgtcgactggcgccagctcaccaagctgaaa
tcgacctataccgacgcgctgccgggcttcgtgcatcctcagaccaagcgggtgcacacc
tcctatgcgctcgcttccacgacgaccggccgcctctcctcctccgagccgaacctgcag
aacattcccgtccgtacggcggaagggcgcaagatccgcacggctttcgtctcgacgccc
ggcaacaagctggtctcggccgactacagccagatcgagctgcgcgtgctcgcccatgtc
gccgatatcccgcagctgaagcaggccttcgccgatggcatcgacattcatgcgatgacg
gcatcggaaatgttcggcgttcccgtcgagggcatgccgggcgaagtgcgccggcgcgcc
aaggccatcaacttcggcatcatctacggcatctcggccttcggtctggccaaccagctc
tccatcgagcgctcggaggccggcgaatatatcaagaagtatttcgagcgcttcccgggc
atcaaggactatatggacagcacgaaggcctttgcgcgcgaacacggctatgtcgagacg
atcttcggccgccgcgcgcattatccagaaatcaagtcgtccaatccgtcggtgcgtgcc
ttcaacgaacgcgcggcgatcaacgcgcccatccagggttcggcagccgacatcatccgc
cgcgccatggtgaagatggagccggcgcttgccgccgcgggcctttcggcccgcatgctg
ctgcaggtgcatgacgaactgatcttcgaggtcgaggacggcgaggtcgaaaagaccatc
cccgtcatcgtcgacgtcatggaaaacgcctcgatgccggcgctttccatgaaggtgccg
ctgaaggtggatgcgcgcgccgcccataactgggacgaggcgcactga
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