Shinella oryzae: K6301_00680
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Entry
K6301_00680 CDS
T08112
Name
(GenBank) long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
soj
Shinella oryzae
Pathway
soj00061
Fatty acid biosynthesis
soj00071
Fatty acid degradation
soj01100
Metabolic pathways
soj01212
Fatty acid metabolism
soj02024
Quorum sensing
soj04146
Peroxisome
Module
soj_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
K6301_00680
00071 Fatty acid degradation
K6301_00680
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
K6301_00680
09145 Cellular community - prokaryotes
02024 Quorum sensing
K6301_00680
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
soj01004
]
K6301_00680
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
soj04147
]
K6301_00680
Enzymes [BR:
soj01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
K6301_00680
Lipid biosynthesis proteins [BR:
soj01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
K6301_00680
Exosome [BR:
soj04147
]
Exosomal proteins
Exosomal proteins of breast milk
K6301_00680
Exosomal proteins of breast cancer cells
K6301_00680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
UPA24773
LinkDB
All DBs
Position
complement(137620..139320)
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AA seq
566 aa
AA seq
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MSAIEQKPSTEASGRFWLASYPEGMAQTIAPLGHSSIGALVESCCARFAERPAFTSMGKT
LTFRDFEAASKKVAAWLQAQGLAKGDRVAVMMPNILQNPVVIFGILRAGLVVVNVNPLYT
PRELEHQLKDSGAKALFVLENFAGTVAQVVSRTAVRHVVVTTMGDMLGLKGLIVNLVVRK
IKKLVPAWSLPGHIPFKQVMAEGAHATLKPADISPGDTAFLQYTGGTTGISKGATLTHAN
LLSNMEQIKLWIEPVFRLKKRPEQLVFVCALPLYHIFALTVNGLMGIALGGHNVLIANPR
DIPAFVKELGKYRVHIFPGLNTLFNAMMNNPDFQKLDFSELVLTLGGGMAVQRPVAERWQ
KITGCAVTEGYGLSETSPVATANRFDSPDFTGTIGLPLPSTDIEIRDDEGKTLALGEVGE
ICIRGPQVMAGYWQRPDETAKVMTPDGFFRSGDVGFMTAEGYTKIVDRKKDMILVSGFNV
FPNEVEEVAMSLAGVLECAAIGVPDEHSGEAVKLFVVKKDDALTEADVKAHCVANLTNYK
RPKFIEFRTELPKSNVGKILRKDLRG
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccatagaacagaagccatccaccgaagcgtccggccgtttctggctcgcgtcc
tatccagagggcatggcgcagacgatcgcaccgcttggccattcatcgatcggcgcgctg
gtggaaagctgctgcgcccgctttgccgagcgccccgcctttaccagcatgggcaagacg
ctcaccttccgcgacttcgaggcagcctccaaaaaggtcgcggcctggctgcaggcgcag
gggctagccaagggcgaccgcgtcgcggtgatgatgcccaatatcctgcagaacccggtc
gtgatcttcggcatcctgcgcgccggtctcgtcgtggtcaatgtcaatccgctctacacg
ccgcgcgagctggaacatcagctgaaggattcgggcgcgaaggcgctgttcgtgctggag
aattttgccggcaccgtggcgcaggtcgtctcgcgaaccgccgttcgccatgtcgtcgtc
accacgatgggcgacatgctcggcctcaaagggctgatcgtcaatctcgtggtgcgcaag
atcaagaagctcgtgcccgcgtggtccctgccgggacacattcccttcaagcaggtcatg
gccgagggagcgcacgccaccttgaagccggcggacatttcgcctggcgatacggccttc
ctgcaatataccggcggcacgacgggcatctccaagggcgcgacactcacccacgccaac
ctgctttccaacatggagcagatcaagctgtggatcgagccggtcttccgcctcaagaag
cggcccgagcagctcgtcttcgtctgcgcgctgccgctctaccatatcttcgcgctcacc
gtgaacggcctgatgggcatcgcgctcggcggccacaacgtgctgatcgccaatccgcgc
gacatcccggccttcgtcaaggaactgggcaagtaccgcgtccacatcttccccggcctc
aacacgctgttcaacgccatgatgaacaacccggatttccagaagctggacttctccgag
ctggtgctgacgctcggcgggggcatggcggtgcagcggcccgtcgccgagcgctggcag
aagatcacgggttgcgcggtgaccgaaggctacggcctgtcggagacttcgccggtcgcc
accgccaaccgcttcgacagccccgatttcaccggcacgatcggcctgcccctgccctcc
accgatatcgagatccgcgacgacgagggcaagacgctggcgctcggcgaggtcggcgag
atctgcatccgcgggccgcaggtcatggccggctactggcaacggccggacgaaacggca
aaggtgatgacaccggacggtttcttccgctccggcgatgtcggcttcatgaccgcggaa
ggctataccaagatcgtcgaccgcaagaaggacatgatcctcgtttccggtttcaacgtc
ttccccaacgaggtggaggaggtggcgatgtcgctggccggcgtgctggaatgcgcggcg
atcggcgtgcccgacgagcattccggcgaggccgtgaaactcttcgtcgtcaagaaggac
gacgccctgacggaagccgacgtgaaggcccattgcgtcgccaacctgacgaactacaag
cggccgaaattcatcgaattccgcactgaacttccgaaatccaatgtcggcaagatcctt
cgcaaggacctccggggctga
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