Shinella oryzae: K6301_01265
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Entry
K6301_01265 CDS
T08112
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
soj
Shinella oryzae
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
soj03016
]
K6301_01265 (truB)
Enzymes [BR:
soj01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
K6301_01265 (truB)
Transfer RNA biogenesis [BR:
soj03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
K6301_01265 (truB)
Prokaryotic type
K6301_01265 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
TruB_C
Motif
Other DBs
NCBI-ProteinID:
UPA24877
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All DBs
Position
256437..257369
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AA seq
310 aa
AA seq
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MSKPRKPKGRPVSGWLILDKPFDFGSTEAVAKVKWLLKAQKAGHAGTLDPLASGMLPIAL
GDATKTVPYVMDGRKIYEFTVTWGEERTTDDLEGEVTQSSDKRPTAEEIKAILGGYTGTI
QQIPPQFSAIKIDGERAYDLAREGETVEIPSREVEIHRLTLLASDEKTARFQVECGKGTY
VRALARDFGRQLGCYGHISALRRTFVAPFGEDDMVPLADLVALEKIEDEAERLAALDAFL
IDTGEALSSLPQIIINDDQAHRLRMGNPIILRGRDAPVSADEAYATARGKLVAIGEIGGG
EFRPKRVFQG
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagccccgcaaacccaagggccggccggtttccggctggcttattctcgacaag
ccgttcgatttcggctcgaccgaagccgtcgccaaggtcaagtggcttctcaaggcccag
aaggccggtcatgccggcacgctcgatccgctcgcctctgggatgctgccgatcgcgctg
ggcgatgcgaccaagaccgttccctacgtcatggacggccgcaagatctatgagttcacc
gtcacctggggcgaggagcgcacgaccgacgacctggaaggcgaggtgacgcagagttcc
gacaagcgcccgacggccgaagagatcaaggcgatcctcggcggctataccggcaccatc
cagcagatccccccgcagttttcggccatcaagatcgatggcgagcgtgcctatgatctc
gcccgcgaaggcgaaacggtggaaatcccgtcccgcgaggtggaaatccaccgcctgacg
ctgctcgcgtcggacgagaagaccgcgcgcttccaagtagagtgcggcaaggggacctat
gtccgcgcgctcgcccgagacttcggccgccagctcggctgttacggtcatatctcggcg
ctgcgccgcaccttcgtcgcgcccttcggcgaggacgacatggtgccgctcgccgatctg
gtggcgctggaaaagatcgaggacgaagccgagcgccttgcggcgctggatgccttcctg
atcgatacgggcgaggccctctccagcctgccgcagatcatcatcaacgatgaccaggcg
catcggctgcgcatgggcaatcccatcatccttcgcggccgcgatgcgccggtttccgcg
gatgaggcctatgccacggcgcgcggcaagctggtggcgatcggcgaaatcggcggcggc
gagttccgccccaagcgggtcttccaaggttga
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