Shinella oryzae: K6301_02405
Help
Entry
K6301_02405 CDS
T08112
Name
(GenBank) pseudouridine synthase
KO
K06178
23S rRNA pseudouridine2605 synthase [EC:
5.4.99.22
]
Organism
soj
Shinella oryzae
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
soj03009
]
K6301_02405
Enzymes [BR:
soj01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.22 23S rRNA pseudouridine2605 synthase
K6301_02405
Ribosome biogenesis [BR:
soj03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
K6301_02405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
Motif
Other DBs
NCBI-ProteinID:
UPA25085
LinkDB
All DBs
Position
493526..495385
Genome browser
AA seq
619 aa
AA seq
DB search
MTSKDKPKRPGAKPAGRDTKPRGAASVAAGKKSFGGKPAGKKPFAGKAAPRDGKPARAAK
PAPAAPAGAELAPERISKLLARAGVASRRDIERMIMEGRVSVNGKVLETPVLNASFADRI
EVDGVPVRGIERTRLWLYHKPAGLVTTNADPEGRPTVFDNLPEELPRVMSIGRLDINTEG
LLLLTNDGGLARMLELPTTGWLRRYRVRAHGKIEQADLDKLKEGIAVDGVLYGSIDATLD
KAQGSNVWLTLGLREGKNREVKNVLGALGLDVNRLIRISYGPFQLGELPEGHAQEIRGRT
LRDQLGPRLIEESGANFDAPLFDHKADEDAAAKPVKPREEASAWSERPAERREKPAGRRD
GDRREQARARLDTKRDDRFSDKPRGGPRDRDRDGDRFESKPKREPANRARKSNVWMAPGA
RPVAEKTADASAEGVKREPRVRPEGAPKTKRYGRTADGAPTRSAKKFDPDRKGFDSRGPA
RGRPGDDRVEKPRILKTRDEDGEWIRASEPEAGGRDDGGRGGFGRKRSGAGDDRAPRDFG
DRKPRAQGERSFGGGERSFGDRKPRAEGERSFSDRPPRRDGGKSFGGKPGGKSFGGKPGG
GKPGGGRPAGGGRPRGKGK
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgacatccaaagacaagccaaaacggccgggcgcaaagcccgcgggccgcgataccaag
ccgcgtggcgccgcatcggtggccgcgggcaagaaatccttcggcggcaagccggcgggc
aagaagccgtttgccggcaaggcggcgccgcgcgacggcaagcccgcccgtgccgccaag
ccggcacctgccgcaccggccggggccgaactcgcgcccgaacgcatttccaagctgctc
gcccgcgcgggcgtggcctcgcgccgcgatatcgagcgcatgatcatggaaggccgcgtc
agcgtgaacggcaaggtgctggagaccccggtgctcaacgccagcttcgccgaccgcatc
gaggtggatggcgtgccggtgcgcggcatcgagcgcacgcgcctgtggctctaccacaag
ccggccggcctcgtgacgaccaatgccgatccggaaggccgcccgaccgtcttcgacaac
ctgcccgaagaattgccgcgggtcatgtccatcggccgcctcgacatcaacaccgaaggc
ctgctgctgctgaccaatgacggcggcctcgcccgcatgctggagctgccgacgaccggc
tggctgcgccgctaccgcgtgcgcgcccacggcaagatcgagcaggccgatctcgacaag
ctgaaagaaggcatcgccgtcgacggcgtgctctacggctcgatcgacgcgacgctcgac
aaggcgcagggctccaatgtctggctgacgctcggcctgcgcgaaggcaagaaccgcgaa
gtcaagaacgtgctcggcgcgctcggccttgacgtcaaccggctgatccgcatttcctac
ggcccgttccagctcggcgagctgccggaaggccatgctcaggaaatccgcggtcgcacg
ctgcgtgaccagctcggcccgcgcctgatcgaggaatccggtgcgaatttcgacgcgccg
ctcttcgaccacaaggcggatgaggatgccgccgccaagccggtgaagccccgcgaggag
gcgtccgcctggagcgagcgtccggcagagcgccgcgagaagcccgccggccgccgcgat
ggcgatcgccgcgagcaggcccgcgcccggctggataccaagcgcgacgaccggttcagt
gacaagccgcgcgggggtccgcgcgaccgggatcgcgacggcgaccgcttcgaaagcaag
ccgaagcgcgaacctgcgaaccgtgcccgcaagtccaatgtctggatggcgcccggcgcc
cgtcccgttgccgaaaaaacagccgatgcgtcggcggaaggcgtgaagcgcgagccgcgc
gtgcgtcccgaaggcgctcccaagaccaagcgttacggccgcacggccgatggcgcgccg
acccgttcggccaagaagttcgatccggaccgcaagggtttcgacagcaggggtccggcc
cgcggccgccccggtgatgatcgtgtggaaaagccccgcatcctgaagacgcgcgacgag
gacggcgaatggatccgcgcctccgagccggaggccggtggccgtgatgatggcggccgt
ggcggcttcggacgcaagcgctccggcgccggcgatgaccgcgcaccccgcgattttggc
gaccgcaagccgcgtgcgcagggcgagcgttccttcggcgggggtgaacgctcctttggc
gaccgcaagccacgggcagagggcgaacgctcgttctccgaccgtccgccgcgccgcgac
ggtggcaagtcgttcggtggcaaacccggcggcaagtcctttggcggaaagcccggtggc
ggcaagcccggcggtggccgtcctgccggcggcggccgtccgcgcggcaagggcaagtaa
DBGET
integrated database retrieval system
