Shinella oryzae: K6301_04590
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Entry
K6301_04590 CDS
T08112
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
Organism
soj
Shinella oryzae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
Big_13
GBD_IRG7_N
Motif
Other DBs
NCBI-ProteinID:
UPA26218
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All DBs
Position
931476..933764
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AA seq
762 aa
AA seq
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MKNKTGLVALIVLAAATLLMVFFVLPNMNTDKPAETTVSTASETPATGGGDTTTAAGKQA
RGTSEAAGEAAATDGTAGAEATPTQDATATQETATQETAKADATPATPGEGWVTPSFDVL
RVEPDGSTVIAGRGQPNSKLEIKNGDTVVATADIGPSGDFAAVFDQPLAAGDYQLTLNTK
DDKGASKTSEEVATVSVPKDGAGDLLAMVSRPGEASRLITVPKTETAGTAAEGATATPAG
ETADKPATEPATETASADAGTAAGEQPAAGETASAAEDGATTSGDAATASAPEAVAKEAQ
ARVSAVELEGRRMFIAGTAKPGALVRLYADDTLVGETKADEQGRFVADGTIDLSVGRHTI
RADVMSADGEKVEFRASVPFDRPEGEQVAAVVAQDNATGASDAALGLIGGGTFDKLRGDA
DKALALLKGLYANGAVPSAEQLAAARSATEIALKSLAEFKPGEEEGDAARTMAAKASAAA
ADALAHLRALPADAAAVGAALGSIETAVADALAPAIEKAQTMAENVAAVADGSIEALVEQ
TAAIHQKFVALFADGRNATAAEIQTGRSALEAALQKIVGFTVPADTTGDVAAAIEKLKGW
ASTALDRLAAVPAGAGADAYRQALVALEGMPSLSAAAGAVETTTEGAAPATAGSDTAETA
GSGTAVTPAGGEAAAEEPETVEQAPLQASKTSVIIRRGDTLWQISRRIYGKGVRYTTIYL
ANEDQITDPDRIIPGQVFGVPDKTVETDAAAEEMHRKHVRGN
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacaagaccggcctggtggccctgatcgtgctggcggcggcaacgctgctcatg
gttttcttcgtgctgcccaacatgaacacggacaagccggccgaaaccaccgtctcgacg
gccagcgagacgccggccacaggcggcggcgataccaccacggcagccggcaagcaggcg
cgcggcactagcgaagccgccggcgaggccgccgcgaccgacggtacagcgggcgctgaa
gccaccccgacacaggacgcgaccgccacgcaggaaacggccacgcaggaaaccgccaag
gcggatgcgacgccggccacgccaggcgagggctgggtcacgccgtccttcgacgtgctg
cgcgtcgagcccgatggctccacggtcattgccggccgcggccagccgaacagcaagctg
gagatcaagaacggcgatacggtcgtcgccacggccgatatcggcccgtcgggcgatttc
gccgccgtcttcgaccagccgctcgctgccggcgactatcagctcaccctcaacacgaag
gacgacaagggcgcgtcgaagacctccgaggaggtcgcgaccgtttccgtgcccaaggac
ggcgcgggcgatctgcttgccatggtctcccgtcccggcgaggcgagccgcctgatcacg
gttcccaagaccgagaccgccggcacggccgccgagggcgcgaccgcgacgccggccggc
gaaacggccgacaagccggcaaccgagccggcaaccgagaccgcgtctgcggatgccggt
acggccgcaggcgaacagcctgccgcaggcgaaaccgccagcgcggccgaggacggggca
acgacatccggcgatgccgcgacggcgtctgcgcccgaggccgtcgccaaggaagcgcaa
gcccgcgtttcggccgtggagctggaaggccggcgcatgttcatcgccggcaccgccaag
cccggcgcgctggtccgcctctatgccgacgacacgctcgtcggcgaaacgaaggcggac
gagcagggccgtttcgtggccgacggcacgatcgatctttcggttggtcgccacacgatc
cgtgccgatgtcatgagcgccgatggcgaaaaggtcgagttccgcgcctccgtgccgttc
gatcgtccggaaggcgagcaggtcgccgccgtcgtcgcgcaggacaatgcgacgggcgcc
tccgatgccgcgctcggcctgatcggcggcggcaccttcgacaagctgcgcggcgatgcc
gacaaggcgctggcgcttttgaaggggctctatgcaaacggcgccgttccctctgccgaa
caactggccgcggcccgctcggcgacggaaatcgccctgaagtcgctggccgaattcaag
cccggcgaagaggagggcgacgccgcccgcacgatggccgccaaggcttcggccgctgcg
gcagacgcgcttgcccacctgcgcgcactgccggcggatgccgctgccgtaggtgcggcg
ctcgggtccatcgagacggccgtcgcggacgcgctcgcaccagcaatcgagaaggcgcag
accatggccgagaatgtcgcggccgtggccgacggctccatcgaggcactggtcgaacag
accgcggcgatccaccagaagttcgtggcgctcttcgccgatggccgcaatgccacggcg
gcggaaatccagaccggccgttcggcgctggaggcagccctccaaaagatcgtcggcttc
accgtcccggccgatacgaccggcgacgtggctgcggccatcgagaagctgaagggctgg
gcctccaccgcgctcgaccgcctggccgccgttcctgccggcgcgggcgcggatgcctat
cgccaggcgctcgtggcgctggaaggcatgccttcgctcagcgccgccgccggcgccgtg
gaaaccacgaccgaaggcgcagcaccggcgacggccggctctgacactgcggaaaccgcg
ggcagcggcacggcggtaaccccggcgggcggcgaggccgcggccgaggagccggaaacg
gtcgagcaggcgccgcttcaggccagcaagacgtccgtcatcatccgccgcggggatacg
ctgtggcagatctcccgccgcatctatggcaagggcgtgcgctacacgacgatctatctc
gccaacgaggaccagatcaccgatccggaccgcatcatccccggccaggtcttcggcgtc
ccggacaagacggtggagaccgacgcggcggccgaggagatgcaccgcaagcatgtgcgc
ggcaattga
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