Shinella oryzae: K6301_04995
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Entry
K6301_04995 CDS
T08112
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
soj
Shinella oryzae
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
soj01002
]
K6301_04995
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
soj01011
]
K6301_04995
Peptidases and inhibitors [BR:
soj01002
]
Cysteine peptidases
Family C82
K6301_04995
Peptidoglycan biosynthesis and degradation proteins [BR:
soj01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
K6301_04995
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
UPA25559
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Position
1016158..1017480
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AA seq
440 aa
AA seq
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MSRKTETDVFSRRAFLRSAATFGAAAVAGPALAQTALDDVLNAPRRGNWDDQFDAQASRA
SAAVQSNNPILGSGSVPNIQQAISDYQQIVSNGGWPQVNSSQKLQIGVVDSGVQALRQRL
IISGDLPRAAGISDSFDSYVDGAVKRFQARHGLPQDGVLGEYTLKAMNVPATTRLSQLNT
NLVRLQTMSGDLGQRYVMVNIPAAYIEAVEGGRVASRHVAVVGRMSRPTHIINSKIYEVI
LNPYWTAPRSIIEKDIVPLMRQDPTYLARNNIRLIDGKGQEVAPETVDWNAEKAPNLMFR
QDPGKINAMSSTKINFHNPNNEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLTTWLLRD
TPGWSREKIEQVINSRVSSPIRLATEVPVYFVYISAWSARDRVVQFRDDIYQMDGATELA
LQTGYNQEGGQSVESNLLPQ
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcaaaaccgaaactgatgtgttctcgcgccgcgcttttctgcgctccgccgca
accttcggcgccgccgccgttgccggcccggctctggcccagacggcgcttgacgatgtc
ctgaatgcaccgcgccgcggcaactgggacgaccagttcgatgcgcaggcctcgcgtgca
tccgcggccgtccagtccaacaatcccatcctgggctcgggttcggtcccgaacatccag
caggcgatttccgattaccagcagatcgtctcgaacggcggctggccgcaggtcaattcg
tcccagaagctgcagatcggcgtcgtcgattccggcgtgcaggcgcttcgccagcgcctg
atcatctcgggcgacctgccgcgggccgccggcatctcggactccttcgattcctacgtc
gatggcgcggtcaagcgtttccaggcccgccacggcctgccgcaggacggcgttctcggc
gaatacacgctgaaggccatgaacgtgcccgccacgacccgcctcagccagctgaacacc
aaccttgtgcgcctgcagaccatgtcgggcgacctcggccagcgctatgtcatggtgaac
atcccggccgcctatatcgaggcggtggaaggcggtcgcgtggcctcacgccacgttgcc
gtggtcggccgcatgagccgaccgacccacatcatcaattccaagatctatgaggtcatc
ctcaacccctactggacggcgccccgctcgatcatcgaaaaggacatcgtgccgctgatg
cgtcaggacccgacctatctggcgcgcaacaacatccgcctcatcgacggcaagggccag
gaagtggcgccggaaaccgtggactggaacgccgagaaggcgccgaacctgatgttccgc
caggacccgggcaagatcaacgccatgtcctcgacgaagatcaacttccacaacccgaac
aacgaatacatgcacgacacgccccagcagggcctgttcaacaagctgatgcgcttcgaa
tcctccggctgcgtgcgcgtgcagaacgtacgcgacctgacgacctggctgctgcgcgac
acgcccggctggtcgcgcgagaagatcgagcaggtcatcaactcccgtgtcagctcgccg
atccggctggcgaccgaggtgccggtctacttcgtctacatctccgcatggtcggcccgc
gaccgcgtcgtgcagttccgcgacgacatctaccagatggacggcgccacggaactggcg
ctccagaccggctacaaccaggaaggcggccagtccgtcgagagcaatctgctgccgcaa
taa
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