Shinella oryzae: K6301_06055
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Entry
K6301_06055 CDS
T08112
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
soj
Shinella oryzae
Pathway
soj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K6301_06055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soj03021
]
K6301_06055
03400 DNA repair and recombination proteins [BR:
soj03400
]
K6301_06055
Enzymes [BR:
soj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K6301_06055
Transcription machinery [BR:
soj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K6301_06055
DNA repair and recombination proteins [BR:
soj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K6301_06055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
IDH
Motif
Other DBs
NCBI-ProteinID:
UPA25756
LinkDB
All DBs
Position
1213586..1214596
Genome browser
AA seq
336 aa
AA seq
DB search
MIQKNWQELIKPNKVEFTSSGRTKASLVAEPLERGFGLTLGNALRRVLLSSLRGAAVTAV
QIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDAKRMVVRKQGPGVVTAGDIQTVG
DIEILNPEHVICTLDEGAEIRMEFTVNNGKGYVPADRNRSEDAPIGLIPVDSLYSPVKKV
SYKVENTREGQVLDYDKLTMTIETDGSVTGEDAIAFAARILQDQLSVFVNFDEPQKEAEE
ESVTELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLN
EIKEVLASMGLHLGMEVPAWPPENIEDLAKRYEDQY
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgatccagaaaaactggcaggaactgatcaagccgaacaaggtggagttcacctcctcc
ggccgcaccaaggcaagccttgttgccgagccgctggagcgtggcttcggcctgacgctc
ggcaacgcgctgcggcgcgtgctcctgtcgtcgctgcgcggtgcggctgttaccgccgtg
cagatcgacggcgtcctgcacgagttctcctccatcccgggcgtccgggaagatgtgacg
gacatcgtgctcaacatcaaggaaatcgccatcaagatggatggcgatgacgcgaagcgt
atggtcgtgcgcaagcagggtccgggcgtcgtgacggctggtgacatccagacggtcggc
gacatcgagatcctgaaccccgagcatgtcatctgcaccctcgacgagggcgcggagatc
cgcatggagttcacggtcaacaacggcaagggctatgtcccggctgatcgcaaccgttcc
gaagacgcaccgatcggcctcataccggtcgatagcctctactcgccggtcaagaaagtg
tcctacaaggtggaaaacacccgcgaaggccaggttctcgactacgacaagctgacgatg
accatcgaaaccgacggttccgtcacgggcgaggatgcgatcgcgttcgcggctcgcatt
cttcaggaccagctctcggtcttcgtcaacttcgacgagccgcagaaggaagccgaggaa
gaatcggtcacggaactggcgttcaacccggcgcttctcaagaaggtcgacgaactggaa
ttgtccgtccgttcggcgaactgcctgaagaacgacaacatcgtctatatcggcgatctc
attcagaagaccgaagccgagatgcttcgcactccgaattttggtcgcaagtcgctcaac
gagatcaaggaagttctcgcttccatgggcctgcacctcggcatggaagtgccggcatgg
ccgcccgagaacatcgaagatctcgccaagcgctacgaagaccagtactga
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