Shinella oryzae: K6301_06310
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Entry
K6301_06310 CDS
T08112
Symbol
secD
Name
(GenBank) protein translocase subunit SecD
KO
K12257
SecD/SecF fusion protein
Organism
soj
Shinella oryzae
Pathway
soj02024
Quorum sensing
soj03060
Protein export
soj03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
K6301_06310 (secD)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
K6301_06310 (secD)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
K6301_06310 (secD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
soj02044
]
K6301_06310 (secD)
Secretion system [BR:
soj02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
K6301_06310 (secD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SecD_SecF_C
SecDF_P1_head
Sec_GG
SecD_1st
MMPL
ACR_tran
Motif
Other DBs
NCBI-ProteinID:
UPA25801
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All DBs
Position
1260857..1263364
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AA seq
835 aa
AA seq
DB search
MQQSARWKTFLLWSAFLASLLVLLPSLMPARMAAGLPDWISAHRLKPGLDLTGGSRLVLD
VSRDDIVDARLRGAVETIGNALRAAQIPYGNLNGADDQVDVTISATGDADKARQALEGLG
LGTLNTGENGEFSIVLSDAAVDEAVAAASLGAVDAVRRRVESLDIPALTVGRGDRGRIVV
SMPGLTDPQRVKDMLATVGKLSARLIDDSVPVNTAIENGAPAGSEVLYSADEPPTGYLVR
QDDLFTAADVASARASADGEPFIEFVLRKEAADKLAAFTRDNAGRTIAILLDGQVISTSQ
IQGAISDGVGRLSGDFDAEGAANLARIVASGPLPAALTILEERSIEPVLGTTSVGSIVLA
LVVAVVAVVAFITFFYGVLGVIASLALFFNVLLTFAALALIGMPISLSMIAGIVLTVGLA
VDASVLIFERIREEVKAGRPLSQAVSVGFGRARTTVLDASVTMLIAVAVLFLLSAAPVRG
FALAVGVGMVATLFTTFGLTHRLVRIWLGRSHATRLPKGVRSGFFDSLNLRFMAVRNAVF
LATAALSLVIAGLLALGELRLGIDFTGGAAVEVQAKSGKADPFDISARLADAGVAVQTVD
TRADERRAIVRLTSQGDGENAEQTSVLVARGELEDDYDFRRVEVVGPSISGELIDTASLG
FVAGLLALIAYIWVRFEWHFAIGAVIALAHDVFFTLGFLAIANIEFNISAVAALLTVAGY
SLNDTMVVYDRIRENLRHFKQMPLPILIDDAINRTLSRTVLTSATTLIALAALALFGGEA
IRTFALTLFFGVAVGTISSIYIAGPILILFRLRPERYRPGKGGAVTAPEATGANG
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaatccgcccgctggaaaacattccttctctggtccgcgttcctggccagcctt
ctcgtcctgttgccgagccttatgccggcccgcatggcggccggccttccggactggatc
tccgcgcatcggctgaaaccgggcctggacctgaccggcggatcccgcctcgttctcgat
gtttcccgtgacgatatcgtcgatgcgcgcctgcgtggcgccgtcgagacgatcggcaac
gccttgcgggcagcgcagattccctacggcaatctcaacggcgcggacgatcaggtcgat
gtgacgatatcggcgactggtgacgccgataaggcaaggcaggcgctcgaaggccttggg
ctcggtacgctcaataccggcgaaaacggcgagttcagcatcgtgctgtccgatgccgcc
gtcgatgaagccgtggcggccgcatcgctcggcgcggtcgatgccgtgcgccggcgggtt
gagagcctggatattcccgcgctgaccgtcgggcgcggcgaccgcggccgcattgtcgtg
tccatgcccggcctgaccgacccgcagcgcgtgaaggatatgctggcgaccgtcggcaag
ctttccgcacgcctgatcgacgacagcgtgccggtcaatacggccatcgaaaacggcgca
cctgccggttccgaagtgctctattccgccgacgagccgccgacgggttatctcgtgcgc
caggatgacctctttaccgccgctgatgtggcatcggcgcgggcatcggcggatggcgaa
cccttcatcgaattcgtgctgcgcaaggaagccgcagacaagctcgccgctttcacgcgc
gacaatgccggccgaacgatcgcgatcctgctcgatggacaggtgatctcgacatcgcag
atccagggcgccatcagcgatggcgtcggccggctttccggtgatttcgatgccgaaggc
gcggcaaacctcgcccgcatcgtcgccagcggtccgctgcccgccgcgctcaccattctg
gaggaacggtcgatcgagccggtactcggcacgacgtctgtcggctccatcgtcctggcg
ctcgtcgttgccgtcgtggcggtcgtggccttcatcacgttcttttacggcgtgctgggg
gtcatcgcatcgctggcgctgttcttcaacgtgctgctgacattcgccgcgctcgcgcta
atcggtatgccgatctccctctccatgatcgccggcatcgtgctgaccgtcggccttgcc
gtcgacgcgagcgttctgatcttcgaacgcattcgcgaggaggtgaaggccgggcgcccg
ttgtcgcaggccgtgtcggttggtttcggtcgcgcccgcacgacggttctggatgcgtcg
gtgacgatgctgatcgctgtcgccgtcctcttcctcttgtcggcggcgcctgtgcgcggc
ttcgcgctggcggtcggcgtcggcatggtggcaacgctgttcaccacattcgggctgaca
caccgccttgtgcgcatctggctcggccgcagccatgccacgcgccttcccaaaggcgtg
cgcagcggatttttcgatagcctgaacctgcgcttcatggcggttcgcaatgcggttttc
ctggcgacggccgccctgtcgctcgtgatcgccggcctgcttgcgctcggcgaactgcgg
ctcgggatcgatttcaccggcggcgcggcggtcgaggtccaggcgaaatcgggcaaggcc
gatccgttcgacatatccgcgcgccttgccgatgccggcgtcgccgtgcagaccgtcgat
acacgcgcggacgagcgccgcgccatcgtaaggctgacctcgcaaggcgatggcgaaaac
gccgagcagacctcggtcctcgtcgcgcggggcgaacttgaggacgactacgatttccgc
cgcgtcgaggttgtcggcccgtcgatatcgggagagttgatcgatacggcctccctcggc
ttcgtcgccgggcttctggcgctgatcgcctatatctgggtgcgcttcgaatggcatttc
gccatcggcgccgtcatcgcgctggcgcatgacgtattcttcacgctcggcttcctcgcc
atcgccaatatcgagttcaacatcagcgctgttgccgcgcttctgacggtcgccggctac
tcgttgaacgatacgatggtcgtttacgaccgcatccgcgagaatctacggcacttcaag
cagatgccgctgccgatcctgatcgacgacgcgatcaatcgcacattgtcgcgcacggtc
ctgacctccgcgacgacgctgatcgcgcttgccgcgcttgccctcttcggcggcgaggcg
attcgtacattcgcgctgacgctgttcttcggggtggcggtcggcaccatatcctccatc
tacattgccgggcctatcctcatcctgttccgtctgcggccggagcgctatcggcccggc
aagggcggtgcggtgacggccccggaagcgacgggagccaatggctaa
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