Shinella oryzae: K6301_06735
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Entry
K6301_06735 CDS
T08112
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
soj
Shinella oryzae
Pathway
soj03410
Base excision repair
soj03430
Mismatch repair
soj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K6301_06735 (recJ)
03430 Mismatch repair
K6301_06735 (recJ)
03440 Homologous recombination
K6301_06735 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soj03400
]
K6301_06735 (recJ)
DNA repair and recombination proteins [BR:
soj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
K6301_06735 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
K6301_06735 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K6301_06735 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UPA25878
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Position
1346825..1348633
Genome browser
AA seq
602 aa
AA seq
DB search
MSMLENADPVPRAFLGVERSATGQRWMARLDQAGENRALAMSQTHGLPDLISRVLAGRGV
PFENALEFLDPTLRRLMPEPYSLMDCEAATERLARAIANRERVAIFGDYDVDGASSSALL
YRFLAHFGVEAEIYIPDRIFEGYGPNPAAIGQLIERGAQLIVTVDCGSTSHESLAVARER
GVDVVVIDHHQVGVEVPPALAVVNPNREDDLSGQGHLSAAGVVFLVLVALQRLLRTRGDA
RAGTIDLLSMLDIVALSTVCDVVPLKGLNRAYVVKGLVAARHLGNAGLTALLKQAGIGGP
VTPYHLGFLVGPRINAGGRIGDAALGSRLLTMEEPGEAERIALQLDELNRERQAMEAAML
AEAEAEAQAEYGTGENASVIITAREGWHPGVVGLLASRLKDRFRRPAFAIAFDPSGKGTG
SGRSISGFDLGRMVRAAVDEGILVKGGGHAMAAGLTVERANLGRLRSFFEERAERVVRDL
VAVETLKIDGALSASGATLALADQLEQAGPYGSGHPQPVFALPAHRVRDVRPVGANHLRV
SLEGPDGGRLDAMAFRAAETDLGLFLMKERGQAVHFAGTLSADSWQGNRRIQFRILDAAK
AF
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgttggaaaacgccgatcccgtcccccgcgcctttctcggcgtcgagcgctcc
gcgaccgggcagcgctggatggcgcggctcgatcaggcgggagagaaccgcgcgcttgcg
atgagccagacccacggcctgcccgacctgatttcccgggtgcttgccgggcggggcgta
ccgttcgaaaacgcgctcgaatttctggatccgacattgcgccggctgatgccggaaccc
tacagcctgatggactgcgaagcggccaccgagcggctggcgcgcgctatcgccaaccgc
gagcgcgtggcgatcttcggcgattacgatgtcgacggcgcatcgtcatccgcgctgctc
tatcgtttcctcgcacatttcggcgtcgaggccgaaatctacattcccgaccggatcttc
gaaggctatgggcccaatccggcggcgatcggccagttgatcgagcgcggtgcgcaactg
atcgtcacggtcgattgcggctccaccagccacgaatcgcttgccgtagcgcgcgaacgc
ggcgtcgatgtcgtggtaatcgatcaccaccaggtcggcgtggaggtgccgcccgcgctg
gccgtggtcaatccgaaccgtgaggacgatctgtcggggcaggggcatctgtcggccgcc
ggcgtcgtgttcctcgtgctcgtggccctgcaacggctcctgcgcacgcgtggcgatgcc
cgcgccggcacgatcgatctcctgtccatgctcgatatcgtcgcgctgtcgacggtgtgc
gatgtcgtgccgctcaagggcctgaaccgcgcctatgtcgtaaaaggcctcgtcgccgcc
cgtcatctcggcaatgcgggattgacggcgttgctcaagcaggcaggcatcggcggcccc
gtgacgccctatcatctcggcttcctcgtcgggccgcgcatcaatgccggcgggcgtatc
ggcgacgcggcgctcggcagccggcttctcaccatggaagagcccggagaggccgagcgc
atcgccctccaactggacgagctcaaccgcgagcggcaggcgatggaagcggccatgctg
gcggaggcggaagccgaggcgcaggcggaatacggcacaggcgagaacgcgtccgtgatc
atcaccgcccgcgagggctggcatcccggcgtcgtcggcctgctggcctcccgtctcaag
gatcgcttccggcggccggcctttgccatcgccttcgacccgtccggcaaaggcaccggc
tcgggccgctcgatcagcgggttcgatcttggccgcatggtgcgtgccgcggtggacgaa
ggcattctcgtcaaggggggcggccatgccatggcggccggcctcacggtggaacgcgcc
aacctcggtcggttgcgcagcttcttcgaggagcgcgccgagcgtgtcgtgcgcgacctc
gtggcggtggaaacgttgaagatcgacggggcgctcagcgccagtggtgcgacgcttgcg
cttgccgaccagctggagcaggcgggcccctatggttccggccatccgcagccggtcttc
gccctgccggcgcaccgtgtgcgcgatgtgcggccggtgggtgccaaccacctgcgcgtc
agcctggaagggccggacggtggccgtctcgacgccatggcgtttcgcgcggccgaaacc
gatctcggcctcttcctgatgaaggagcgcggtcaggcggtgcatttcgccggcacgctt
tcggccgacagctggcagggcaacaggcgcatacagtttcgcattctcgatgcggcaaag
gcattctga
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