KEGG   Shinella oryzae: K6301_07000
Entry
K6301_07000       CDS       T08112                                 
Name
(GenBank) vitamin B12-dependent ribonucleotide reductase
  KO
K00525  ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Organism
soj  Shinella oryzae
Pathway
soj00230  Purine metabolism
soj00240  Pyrimidine metabolism
soj01100  Metabolic pathways
soj01232  Nucleotide metabolism
Module
soj_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
soj_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Brite
KEGG Orthology (KO) [BR:soj00001]
 09100 Metabolism
  09104 Nucleotide metabolism
   00230 Purine metabolism
    K6301_07000
   00240 Pyrimidine metabolism
    K6301_07000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:soj03400]
    K6301_07000
Enzymes [BR:soj01000]
 1. Oxidoreductases
  1.17  Acting on CH or CH2 groups
   1.17.4  With a disulfide as acceptor
    1.17.4.1  ribonucleoside-diphosphate reductase
     K6301_07000
DNA repair and recombination proteins [BR:soj03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   Modulation of nucleotide pools
    K6301_07000
SSDB
Motif
Pfam: Ribonuc_red_lgC Ribonuc_red_2_N TACO1_YebC_N Ribonuc_red_lgN
Other DBs
NCBI-ProteinID: UPA25924
LinkDB
Position
1397904..1401722
AA seq 1272 aa
MRIERRFTKPGQSAYADIAFRKATSEIKNPDGSIVFRLADIDVPQQFSQVAADILAQKYF
RKAGVPARLKKVEENDVPSFLWRSVPDTEALKALPEGERFGSETDARQVFDRLAGTWTYW
GWKGKYFATEEDAAAFKDELAYMLATQRVAPNSPQWFNTGLHWAYGIDGPGQGHFYVDPF
TGKLTKSKSAYEHPQPHACFIQSVEDDLVNENGIMDLWVREARLFKYGSGTGSNFSHLRG
EGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEAYINWKVKE
EQKVAALVTGSKIVAGHLKAIMKACVNCSAEGDRCYDPAENPALKREIRAAKKSQVPENY
IKRVIQFARQGYKDLEFTTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVENDGDWNLT
ARKDGKVMKTLKARDLWEQISYAAWASADPGLHFNTTMNDWHTSPAAGPIRASNPCSEYM
FLDDTACNLASLNLLQFKDAVTKNINIADYEHAVRLWTIVLEVSVMMAQFPSRQIAERSY
EYRTLGLGYANIGGLLMSSGIPYDSTEGRAIAGALTAIMTGVSYATSAEMASELGPFPNF
EPNRDNMLRVMRNHRRAAYGETTGYEQLSVNPVALVHDECPDQTLIVHAKAAWDKAVDLG
EKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALR
TLGYSESQIAEIEAYAVGHGNLNQAPAVNPGSLKAKGFTDEKIEAVSAGLKAAFDIKFAF
NQWTLGADFLKETLKVSDEQLADMSFNLLEHIGFTKKEIEAANIHVCGAMTLEGAPFLKP
EHLAVFDCANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYM
LSWKLALKANALYRDGSKLSQPLNASLIEDEDDEDDAVEALVAAPAAAQAVTVTEKIVEK
IIERVVRDREKLPNRRQGYTQKAVVGGHKVYLRTGEFGDGRLGEIFIDMHKEGAAFRAMM
NNFAIAISLGLQYGVPLEEYVEAFTFTKFEPAGMVQGNDAIKNATSILDYVFRELAVSYL
GRHDLAHVDQSDFSNTALGKGIQEGKTNPFSTGWTRGHKPTLIQGGQSGERQLAEPKGAA
TAAPAKAAATGNVTAFAGSAARKIEPTVAISTNEIVAFKRDYEERAAELAEEIAEEVAGE
AEQSVTALFSDKAAAEAASAKADAKKLEAERRMRSIAQGYTGNMCSECQNFTMVRNGTCE
KCDTCGATSGCS
NT seq 3819 nt   +upstreamnt  +downstreamnt
atgcgtatagaacgtcgtttcaccaaacctggccagtcggcctatgcggatatcgcgttc
cgcaaggccaccagcgagatcaagaacccggatggttccatcgtcttccggctggccgat
atcgatgtgccccagcagttcagccaggtcgcagccgacatcctggcccagaagtatttc
cgtaaggcgggcgtgcctgcccggctgaagaaggtcgaggaaaacgacgttccgtcgttc
ctgtggcgctccgtgccggataccgaagccttgaaggcgctccccgagggtgagcgcttc
ggttcggaaaccgatgcccgccaggtcttcgaccgcctcgccggcacctggacctactgg
ggctggaagggcaagtatttcgcgaccgaggaagacgccgccgctttcaaggacgagctc
gcctatatgctcgccacccagcgcgtcgcaccgaactcgccgcagtggttcaacaccggc
ctgcactgggcctacggcatcgacggccccggccagggccacttctatgtcgatcccttc
accggcaagctgaccaagtccaagtcggcttacgagcatccccagccgcatgcctgcttc
atccagtcggtcgaagacgatctcgtgaacgagaacggcatcatggacctgtgggtgcgt
gaagcccgtctcttcaagtacggctcgggcaccggctcgaacttctcgcatctgcgcggc
gaaggcgaaaagctgtccggcggcggtcggtcctccggcctgatgagcttcctgaagatc
ggcgaccgcgcggcgggcgccatcaagtcgggcggcacgacgcgccgtgcggccaagatg
gtcgtggtcgatatcgaccatcctgacatcgaggcctacatcaactggaaggtcaaggaa
gagcagaaggtggcggcgctcgtcaccggctcgaagatcgtcgccggccacctcaaggcc
atcatgaaggcctgcgtcaattgctcggccgaaggcgaccggtgctatgacccggcggaa
aacccggcgctgaagcgcgagatccgcgcggccaagaagtcccaggttccggaaaactac
atcaagcgcgtcatccagttcgcgcgtcagggctacaaggacctcgagttcaccacctat
gacacggactgggattcggaggcctacctcaccgtttccggccagaactccaacaactcc
gtttcgctgaaggacgacttcctgcgcgccgtggagaatgacggcgactggaacctgacc
gcccgcaaggacgggaaggtcatgaagacgctgaaggcccgcgacctctgggagcagatc
tcctatgccgcctgggcatcggccgatccgggcctgcacttcaacacgacgatgaacgac
tggcacacctcgccggccgcgggcccgatccgcgcctcgaacccgtgctcggaatacatg
ttcctcgacgataccgcctgcaacctcgcctcgctgaacctgcttcagttcaaggatgcg
gtgaccaagaacatcaacatcgccgactatgagcacgccgtccgcctctggaccatcgtg
ctggaagtctcggtcatgatggcgcagttcccctcgcgccagattgccgaacgctcctac
gaataccgcacgctcggcctcggctacgccaatatcggcggcctgctgatgtcttcgggc
attccctatgactcgacggaaggccgcgccattgccggtgcgctgaccgcgatcatgacc
ggtgtgtcctatgcgacctccgccgagatggcgagcgagctcggtccgttcccgaacttc
gagccgaaccgcgacaacatgctgcgcgtcatgcgcaaccaccgccgcgccgcctatggc
gagaccaccggctacgagcaactgtcggtcaatccggttgccctcgttcatgacgagtgc
ccggaccagacgctgatcgtccatgccaaggctgcctgggacaaggccgtagacctcggt
gaaaagcacggctaccgcaacgcccagacgaccgtgattgcgccgaccggcacgatcggc
ctcgtcatggactgcgacacgaccggcatcgagcccgacttcgcgctcgtcaagttcaag
aagctcgccggcggcggttacttcaagatcatcaatcgcgccgttcccgaggcgctccgc
acgctcggctattcggaaagccagatcgccgaaatcgaggcctatgccgtcggccacggc
aacctgaaccaggcaccggcggtcaaccccggctcgctgaaggcaaagggcttcaccgac
gagaagatcgaggcggtcagcgccggtctcaaggcggccttcgacatcaagttcgccttc
aaccagtggacgctcggcgccgacttcctgaaggagacgctgaaggtttccgacgagcag
ctcgccgacatgtccttcaaccttctggagcatatcggcttcacgaagaaggagatcgag
gccgccaacatccacgtctgcggtgcgatgacgctggaaggcgcgcccttcctgaagcct
gaacacctcgccgtgttcgattgcgccaatccctgcggcaagatcggcaagcgttacctc
tcggtggaaagccacatccgcatgatggcggccgcccagccgttcatttcgggcgccatt
tccaagacgatcaacatgccgaacgaggcaaccgtcgaggattgcaagaacgcctatatg
ctctcctggaagctcgcgctgaaggccaacgccctctaccgcgacggttccaagctctcg
cagccgctcaatgcctcgctgatcgaggatgaggacgacgaggatgatgccgtcgaggcg
ctggtcgcagccccagctgccgcccaggccgtcacggtcaccgaaaagatcgtggagaag
attatcgaacgcgtcgtgcgcgaccgtgaaaagctgccgaaccgccgccagggttacacc
cagaaggccgtcgtcggcgggcacaaggtctatctgcgcaccggcgaattcggtgacggc
cgcctcggcgagatcttcatcgacatgcacaaggaaggtgccgccttccgtgcgatgatg
aacaacttcgccatcgccatctcgctgggcctccagtacggcgtgccgctcgaggaatat
gtggaggccttcaccttcaccaagttcgagcccgccggtatggtccagggcaacgacgcg
atcaagaacgccacgtcgatcctcgactacgtgttccgcgaactcgccgtctcctatctc
ggccgccatgacctcgcgcatgtcgaccagtcggacttctccaacaccgccctcggcaag
ggcattcaggaaggcaagaccaacccgttctcgaccggctggacgcgcggccacaagccg
acgctcatccagggcggccagtcgggcgaacgtcagctcgccgagccaaagggtgcggcc
actgccgctccggcaaaggcggccgcgaccggcaacgtgacggctttcgccggcagcgcc
gcccgcaagatcgagccgacggttgcgatctccaccaacgaaatcgtcgccttcaagcgc
gattacgaggagcgcgcggccgagctggccgaggagatcgccgaagaggtcgccggagaa
gccgaacagagcgtgactgccctcttctccgacaaggccgccgccgaagcggcttccgcc
aaggcggacgccaagaagctcgaagccgaacgccgcatgcgctcgatcgcccagggctat
accggcaacatgtgctccgagtgccagaacttcaccatggtgcggaacggcacctgcgag
aagtgcgacacctgcggcgcaacgagcggctgctcttga

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