KEGG   Shinella oryzae: K6301_07245
Entry
K6301_07245       CDS       T08112                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K13599  two-component system, NtrC family, nitrogen regulation response regulator NtrX
Organism
soj  Shinella oryzae
Pathway
soj02020  Two-component system
Brite
KEGG Orthology (KO) [BR:soj00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    K6301_07245
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:soj02022]
    K6301_07245
Two-component system [BR:soj02022]
 NtrC family
  NtrY-NtrX (nitrogen regulation)
   K6301_07245
SSDB
Motif
Pfam: Sigma54_activat Response_reg Sigma54_activ_2 HTH_8 AAA_5 AAA_2 Mg_chelatase AAA P-loop_TraG MCM AAA_16 FleQ ABC_tran nSTAND3
Other DBs
NCBI-ProteinID: UPA25965
LinkDB
Position
complement(1448999..1450363)
AA seq 454 aa
MASDILVVDDEEDIREIVSGILSDEGHETRTAFDSDSALAAISDRVPRLVFLDIWMQGSK
LDGLALLDEIKSRHPDLPVVMISGHGNIETAVSAIRRGAYDFIEKPFKADRLILIAERAL
ENSKLRREVTELKKRSGDPVELIGTSVAVSQLRQNIEKVSPTNSRIMILGPSGSGKELVA
RMIHRKSSRANGPFVVLNAAAITPERMEIALFGTEGTPGQPRRTGVLEEAHGGILYLDEI
GEMPRETQNKILRVLVDQQFERVGGSKRVKVDVRIISSTAYNLESLIAEGGFREDLYHRL
AVVPLRVPPLAERREDIPFLVDMFMRQVSEQAGIRARKIGDDALAVLQAHDWPGNIRQLR
NNIERLMILARSDGPDTPISADMLPTEVGDMLPKISTQGDQHIMTLPLREAREMFERDYL
IAQINRFGGNISRTAEFVGMERSALHRKLKSLGV
NT seq 1365 nt   +upstreamnt  +downstreamnt
atggcgtctgatattctcgtagtggacgacgaagaggacatccgcgaaatcgtttccggc
atcctgtcggacgaggggcatgagacccgcaccgccttcgacagcgacagcgcgctcgcc
gccatcagcgaccgcgtgccgcgcctcgtcttcctcgacatctggatgcagggcagcaag
ctcgacgggcttgcgcttctcgacgagatcaagagccgccatccggacctgccggtcgtg
atgatttccggccacggcaatatcgagaccgccgtctcggccatcaggcgcggcgcctac
gatttcatcgaaaagcccttcaaggcggaccggctgatcctgatcgcggagcgggcgctg
gagaactccaagctgcgccgcgaggtgacggagctgaagaagcggtcgggcgatcccgtc
gagctgatcggcacgtccgtcgccgtctcgcagctgcgccagaacatcgaaaaggtctcg
ccgaccaacagccgcatcatgatccttggcccgtccggttccggcaaggaactggtggcg
cgcatgatccaccgcaagtcgagccgcgcgaacgggccgttcgtcgtcctgaatgcggcg
gccattacgccggagcgcatggaaatcgcgctcttcgggaccgaggggacgcccggccag
ccgcgccggaccggcgtgctggaagaggcgcatggcggcatcctctatctcgacgagatc
ggcgaaatgccgcgcgagacgcagaacaagatcctgcgcgtgctggtcgaccagcagttc
gagcgcgtcggcggctccaagcgggtcaaggtcgatgtgcgcatcatctcgtcgaccgcc
tacaatctcgaaagcctgatcgccgaaggcggtttccgcgaggacctctatcaccggctg
gccgtcgtgccgctgcgcgtgccgccgcttgcggaacggcgcgaggacattcccttcctc
gtcgacatgttcatgcgccaggtcagcgagcaggccggcatccgcgcccgcaagatcggt
gacgatgcgctggcggtactccaggcgcacgactggccgggcaatatccgccagctgcgc
aacaatatcgagcgcctgatgatccttgcccgcagcgacggcccggatacgccgatctcg
gccgacatgctgccgacggaagtgggcgacatgctgccgaagatctccacgcagggcgac
cagcacatcatgacgctgccgctgcgcgaggcgcgcgaaatgttcgaacgcgactacctg
atcgcccagatcaaccgcttcggcggcaatatctcccgcacggccgaattcgtcggcatg
gagcgttcggcgctccatcgcaaactgaaatcgcttggcgtataa

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