Shinella oryzae: K6301_09880
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Entry
K6301_09880 CDS
T08112
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
soj
Shinella oryzae
Pathway
soj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K6301_09880 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soj03019
]
K6301_09880 (recQ)
03400 DNA repair and recombination proteins [BR:
soj03400
]
K6301_09880 (recQ)
Enzymes [BR:
soj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K6301_09880 (recQ)
Messenger RNA biogenesis [BR:
soj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K6301_09880 (recQ)
DNA repair and recombination proteins [BR:
soj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K6301_09880 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HHH
Motif
Other DBs
NCBI-ProteinID:
UPA23505
LinkDB
All DBs
Position
complement(2010243..2012081)
Genome browser
AA seq
612 aa
AA seq
DB search
MLDTSTATARPSPLDVLKRVYGYDAFRGKQQAVVEHVTHGGDAVVLFPTGAGKSLCFQIP
ALCRDGVGIVISPLIALMRDQVEALKQLGVKAAALNSSLSREEFFAVRDAMRAGELDMLY
VTPERIVTDGFTDLVAGARIALFAIDEAHCVSQWGHDFRPEYRTLGMLGERYPGVPRIAL
TATADPHTREDIIERLGLDSAEVFTTSFDRPNISYEIAERDQPRQQLLRFLSKHQGESGI
VYCLSRAKVEDTAEWLNTQGVRALPYHAGFDRAVRDANQDAFLKEENLCLVATVAFGMGI
DKPDVRYVAHLDLPGSVEAYYQETGRAGRDGLPSDVWMAYGMADVVQRRKMIDEGGAAEE
IKRIERAKLMSLLAICETAGCRRQAILAHFGESHAGRCGNCDTCRNPVETWDGTEAAIKA
LAAVYRTGERFGAAHVIDVLVGAVNEKTERFGHTEMPVFGAGKDIAKSVWQSIFRQLMAM
GLVSVDHSAFGALKLEPEARAVFRREREVLLRKDRPQTGRKARAGGSPASRERSNLSGSD
LALFEALRAERLAIAKDLDIPPYVVFPDTTLIALARERPADLEELLDIPGIGVSKRDRFG
EAFLAVIEDFAG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacacctccaccgcaaccgcccgcccatctcccctcgacgtgttgaagcgcgtc
tatggctacgatgcctttcgcggcaagcagcaggcggtggtggagcatgtcacccatggc
ggcgacgcggtcgtgcttttccccacgggtgccggcaagtccctgtgtttccagatcccg
gcgctgtgccgcgatggtgtgggcatcgtcatctcgccgctgatcgccctgatgcgcgat
caggtggaggcgctgaagcagctcggcgtgaaggcggcggcgctcaattcctcgctgtcg
cgcgaggagtttttcgccgtgcgcgatgccatgcgcgccggcgagctcgacatgctctac
gtcacgccggagcgtatcgttacggatggtttcaccgaccttgtggcgggcgcccgcatc
gcgctcttcgccatcgacgaggcgcattgcgtctcgcagtgggggcatgacttccggccg
gagtaccggacgctcggcatgctcggcgagcgttatcccggcgtgccgcgcatcgcgctg
acggcgaccgccgatccgcatacgcgcgaggacatcatcgagcgcctgggcctcgacagt
gcggaggtcttcaccaccagcttcgaccggccgaacatctcctacgagatcgccgagcgc
gaccagccgcgccagcagctcctgcgatttctttccaaacatcagggcgagagcggcatc
gtctattgcctgtcgcgcgccaaggtcgaggacacggcggagtggctgaacacgcagggt
gtgcgggcgctaccctatcacgcgggcttcgaccgggcggtgcgcgatgccaaccaggat
gcgttcctcaaggaggaaaacctctgcctcgtggcgaccgtcgccttcggcatgggcatc
gacaagccggatgtgcgctatgtcgcgcatctcgacctgccgggttcggtggaggcctat
tatcaggagaccggccgtgcggggcgtgacggcctgccgtcggatgtctggatggcctat
ggcatggccgatgtcgtgcagcgccgcaagatgatcgacgagggcggggcggccgaagag
atcaagcgcatcgagcgcgccaagctgatgtcgctgctggcgatctgcgagacggccggt
tgccgccggcaggcgatcctcgcgcatttcggcgagagccacgccggccgctgcggcaat
tgcgatacatgccgcaatccggtcgagacctgggacggcaccgaggcggccatcaaggcg
ctggccgcggtctaccgaaccggcgagcgcttcggcgccgcccatgtcatcgatgtgctg
gtgggcgcggtcaatgaaaagaccgagcgtttcggccataccgaaatgccggtcttcggc
gcgggcaaggacatcgcgaaaagcgtctggcaatccatcttccgccagctcatggccatg
gggctggtcagcgtcgaccattcggccttcggcgcgctgaagctggagccggaggcgcgc
gccgtcttccgccgggagcgggaggtgcttttgcgaaaggaccggccgcagaccggccgc
aaggcccgggcgggcggatcgcctgcgtcgcgcgaacgctccaacctcagcggttccgac
ctggcgctgttcgaggcgctgcgcgccgagcgcctggccatcgccaaggacctcgatatt
ccgccttatgtcgtcttccccgatacgacgctgatcgcgcttgcccgcgaacgtcccgcc
gatctggaggagcttctggacattcccggcatcggcgtctccaagcgcgatcgcttcggc
gaagccttcctcgccgtcatcgaggattttgcgggatag
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