Shinella oryzae: K6301_09945
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Entry
K6301_09945 CDS
T08112
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
soj
Shinella oryzae
Pathway
soj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K6301_09945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soj03400
]
K6301_09945
Enzymes [BR:
soj01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
K6301_09945
DNA repair and recombination proteins [BR:
soj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
K6301_09945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
UPA23518
LinkDB
All DBs
Position
complement(2028188..2029642)
Genome browser
AA seq
484 aa
AA seq
DB search
MHTIPLLGRGDFSEWRDAARALAAAGISPREVDWRVNGSEELFEVEVPELPAPSATAPPL
TVPPAFLPLAEAVVCHTEPGRFHLLYRLLWRLQSDKRLLELSADKDVAWARILAKNIHRD
SHKMTAFVRFKEIPGEVEGRRRFFAWFEPSHFVVARTAPFFRRRFADMDWIIATPKGTAS
WDGESLIFDTRPGDNPGHGDPTDDLWRTYYASIFNPARLKLKAMQAEMPKKYWRHLPEAD
LIPELIANAEANVRAMAERAASDPPLFHYRLRENAPALPQIMPAAADTIEGLREEARRCQ
RCPLHCTATQTVFGEGPPDARIMMVGEQPGDQEDLAGRPFVGPAGKVFDAVLKEADIARD
TLYLTNAVKHFKYEPRGKRRIHQKPDRNEIEHCRWWLAKEVEVVKPKLIVALGATAVFAL
SGERKPLSQLRGKPITMQGDVVLYPTIHPSFLLRLPDEAERKRQHTLFIEDMQMVRHLAE
TMAA
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcacacgatccctctccttggccggggtgatttttccgaatggcgcgatgccgcgcgc
gcactcgccgccgctggcatctcgccgcgcgaggtcgactggcgggtcaacggatcggaa
gagctgttcgaggtcgaggttcccgaattgcccgcgccttccgccacggcgccgcctctc
accgtgccgccggccttcctgccgctggccgaggcggtcgtctgccatacggagccgggc
cggttccatctcctctaccggctgctctggcggctgcaatccgacaagcgcctgctggag
ctttcggccgacaaggatgtcgcctgggcgcggatcctggccaagaacatccatcgcgac
agccacaagatgacggccttcgtgcgtttcaaggaaatccccggcgaggtcgaggggcgg
cggcgcttcttcgcctggttcgaaccgtcgcatttcgtcgtggcccgcaccgcgcccttc
ttccggcggcgctttgccgacatggactggatcatcgccacgcccaagggtacggcgagc
tgggatggcgagagcctgatcttcgatacacgtccgggcgacaatcccggccatggcgac
ccgacggacgatctgtggcgcacctattatgccagcatcttcaacccagcgcgcctgaag
ctgaaggccatgcaggcggagatgccgaagaaatactggcgtcatctgccggaagccgac
ctgatcccggaactcatcgccaatgccgaggcgaatgtgcgcgccatggccgagcgcgcg
gcaagcgacccgccgctcttccactatcgcctgcgcgagaatgcgccggcgctgccgcag
atcatgccggccgcggccgataccatcgaggggcttcgcgaggaggcgcgccgctgccag
cgctgtccattgcattgtacggccacccagaccgtgttcggggaggggccgccggatgcc
cgcatcatgatggtcggcgagcagccgggcgaccaggaggacctggccggccgccccttc
gtcggcccggcgggcaaggtgttcgatgccgtgttgaaagaggccgacatcgcgcgcgat
acgctttatctcaccaatgcggtgaagcacttcaaatacgagccgcgcggcaagcgccgt
atccaccagaagcctgaccgcaacgaaatcgaacattgccgctggtggctggccaaggag
gtggaagtcgtcaagccgaagctcatcgtggcgctcggcgcgaccgccgtctttgcgctc
agcggcgaacgcaagccgctcagccagttgcgcggcaagccgatcaccatgcagggcgac
gtcgtgctctacccgaccatccacccgtccttcctgctgcgcctgccggatgaagccgaa
cgcaaacgacaacacaccctcttcatcgaggacatgcagatggtgcggcatctcgcggag
acgatggcggcctaa
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