Shinella oryzae: K6301_10295
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Entry
K6301_10295 CDS
T08112
Name
(GenBank) CCA tRNA nucleotidyltransferase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
soj
Shinella oryzae
Pathway
soj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K6301_10295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soj03019
]
K6301_10295
Enzymes [BR:
soj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
K6301_10295
Messenger RNA biogenesis [BR:
soj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K6301_10295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_RNAbd
tRNA_NucTran2_2
Motif
Other DBs
NCBI-ProteinID:
UPA23579
LinkDB
All DBs
Position
complement(2090978..2092237)
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AA seq
419 aa
AA seq
DB search
MSSVAGEAWFSDPALVRVLSLLNSDGGEARVAGGAVRNSLMGLPVADIDIATTLPPQDVV
ERAKAADIKAVPTGIEHGTVTLVIGGKPFEVTTLRRDVATDGRHAEVMFGTDWQTDAGRR
DLTINALYATQDGTVIDLVNGLPDIESRTVRFIGDAAKRIAEDHLRILRFFRFFALYGSG
RPDAEGLKACARAKDKLGRLSAERVWAETKKLLGAPDPGRALLWMRQAGVLSEILPETEK
WGIDAIPGLIEAEKAFGWQPDALLRLAAIVPPDRERLKALAERLRLSKAEAAVLDGWAAA
PEIAPKLAETAFDRLLYRNGPKGLSMRLRLALASARARGLGDADALAFAGLCQRLLARAE
KWQKPAFPLTGADVLAAGVPAGPDVGTMLARIEDEWVGGNFHDDRARLLARLKALAGEG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgagttcggttgcgggcgaggcgtggttttccgatccggcgctcgtgcgggtgctgtcg
ctgctgaacagcgacggcggcgaggcacgcgtggcgggcggcgcggtgcgcaacagcctg
atgggcctgccggtcgccgatatcgacatcgccaccaccctgccgccgcaggacgtcgtg
gaacgggcgaaggcggcggatatcaaggcggtgccgaccggcatcgagcacggcacggtc
acgctcgtcatcggcggcaagcccttcgaggtgacgaccctgcgccgtgacgtggcgaca
gacggacgccacgccgaagtcatgttcggcaccgactggcagaccgatgcagggcggcgc
gacctgaccatcaacgcgctttatgcgacgcaggacggcacggtgatcgacctcgtgaac
ggcctgccggatatcgaaagccgcaccgtgcgcttcatcggcgacgcagcaaagcgcatc
gccgaggatcatctgcgcatcctgcgcttcttccgcttcttcgcgctctacggcagcggc
cggccggatgccgaggggctgaaggcctgcgcgcgggcaaaggacaagctcgggcggctg
tcggccgagcgggtctgggccgagacgaagaagctgctgggcgcgcccgatccgggccgc
gcgctcttgtggatgcggcaggccggcgtgctgagcgaaatcctgcccgagacggagaaa
tggggcatcgacgcaatccccgggctgatcgaggccgagaaggcgttcggctggcagccg
gatgcgctgctcaggctggcggccatcgtgccgccggatcgcgaacggctaaaggctctt
gccgagcggctgcgtctctccaaggcggaggccgcggttctcgatggttgggcggccgcg
cccgaaatcgcgccgaaactggcggagaccgccttcgaccggctgctctaccgcaatggc
ccgaagggactttcgatgcggttgaggctcgcgctcgcttcggcccgcgcgcgcgggctt
ggcgacgcggatgcgcttgccttcgccggactttgccagcggctgttggcgcgggcggaa
aaatggcagaagcccgctttcccgctcacgggggcggacgtgcttgccgccggtgtgccg
gccggaccggacgtcggtacgatgctcgcgcgcatcgaagatgaatgggtgggcgggaat
ttccatgatgaccgggcaaggctgcttgcccggctgaaggcgctcgccggggagggctga
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