Shinella oryzae: K6301_10705
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Entry
K6301_10705 CDS
T08112
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
soj
Shinella oryzae
Pathway
soj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K6301_10705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soj03019
]
K6301_10705
Enzymes [BR:
soj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K6301_10705
Messenger RNA biogenesis [BR:
soj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K6301_10705
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_22
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UPA23658
LinkDB
All DBs
Position
2178179..2179588
Genome browser
AA seq
469 aa
AA seq
DB search
MTTFHDLGLSKTIVATLSALGFEKATPIQEKAIPLVLEGSDLIGLAQTGTGKTAAFGLPM
IEKLLADARRPDPRNIRALILAPTRELVNQIADNLRDFVKKTPLRVVTVVGGASINKQSE
MLSRGTDILVATPGRLLDLVARKSVTLTQARYLVLDEADQMLDLGFIHDLRKISKMVPKN
RQTLLFSATMPKLIGELAGEYLVNPKKVEVTPPGKAADKVEQYVHHVPGKDQKAQILRKT
LTDNPDGLSLVFSRTKHGAEKLMKHLDHIGFKAASIHGNKSQGQRERALKAFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCTPDEAHLLRD
IEKLMGIQITVASGEAPAVITAGPGGKSRKGRGNGGGRAGQRPARKPFGDGAQAAEGAAP
SGAKRPQHGRPAQKQGERQNRNHGGGNGQGRPQRQGKPRRPEGQRREQA
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
ttgaccacttttcacgacctcggcctctcgaagaccatcgtcgctaccctctccgctctc
ggcttcgaaaaagcgacgccgatccaggaaaaggccattccgctcgtcctcgaaggctcc
gacctgatcggccttgcccagaccggcaccggcaagacggccgccttcggcctgccgatg
atcgagaagctgctggccgacgcccgccgtcccgacccgcgcaacatccgcgccctcatc
ctcgccccgacccgcgaactggtgaaccagatcgccgacaacctgcgcgacttcgtgaag
aagacgccgctgcgtgtcgtcaccgtcgtcggcggcgcctccatcaacaagcagtcggaa
atgctgtcccgcggcacggacattctcgttgccacgcccggccgcctgctcgacctcgtc
gcccgcaagtcggtgacgctgacgcaggcccgctacctcgtgctcgacgaggccgaccag
atgctggacctcggcttcatccacgacctgcgcaagatttccaagatggtgccgaagaac
cgccagacgctgctcttctcggccaccatgccgaaactgatcggcgaactggccggcgaa
tatctcgtcaacccgaagaaggtcgaagtaacccctccgggcaaggccgccgacaaggtg
gaacagtatgtccaccacgttccgggcaaggaccagaaggcgcagatcctgcgcaagacg
ctcaccgacaatccggatggcctgtcgctcgtcttctcgcgcaccaagcatggcgccgag
aagctgatgaagcatctcgaccatattggcttcaaggccgcgtccatccacggcaacaag
agccagggccagcgcgagcgcgcgctcaaggccttccgtgacggcgagatccgcgtcctc
gtggcgaccgacgtcgccgcccgcggcatcgacattcccggcgtcacgcatgtctacaac
tacgacctgccggaagtgccggacgcctatgtccaccgcatcggccgcacggcccgcaac
ggccgcgacggcatcgcgatcgccttctgcacgcccgacgaagcgcacctgctgcgcgac
atcgagaagctgatgggcatccagatcaccgtcgccagcggcgaagcgcctgctgtcatc
accgccggccccggcggcaagtcgcgcaagggtcgcggcaacggcggcggccgcgccggc
cagcgcccggcccgcaagcccttcggcgatggcgcgcaggcagcggaaggtgcagcccct
tcgggcgccaagcgtccacagcacggtcgccccgcccagaagcagggcgaacgccagaac
cgcaaccatggcggcggcaacggccagggccgtccgcagcgtcagggcaagccgcgccgg
ccggaaggccagcgccgcgaacaggcctga
DBGET
integrated database retrieval system
