Shinella oryzae: K6301_11780
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Entry
K6301_11780 CDS
T08112
Name
(GenBank) sigma-54 dependent transcriptional regulator
Organism
soj
Shinella oryzae
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Motif
Pfam:
Sigma54_activat
Response_reg
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
HTH_50
HTH_7
AAA
Mg_chelatase
MCM
AAA_2
HTH_23
HTH_22
HTH_29
AAA_7
HTH_28
Phage_AlpA
RWP-RK
TetR_N
AAA_22
FleQ
Phage_CP76
AAA_16
VpsR
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
UPA23855
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Position
complement(2397081..2398607)
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AA seq
508 aa
AA seq
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MTAHILVIDDDPVQRRLLKNMIERSGHVAHMAENGRAGLDLLDRKGGLINVILLDLMMPE
MNGTAFLEVLAERENTIPVIVQTGQGGIETVVMAMRAGAFDFVVKPVSPERLGVAVGNAL
KMDQREGRSRAGRRNRAETIHFEDIISASPEMLRVIELGRRAAQSNIPVVLEGESGVGKE
MVARAIQAASDRANKPFVTVNCGAIPHNLVESILFGHEKGAFTGATERHTGKFMEADGGT
LFLDEIGDLPLEVQVKLLRAVQQGEIETIGARFPQKVNVRLISATNRDLINEVREGRFRE
DLYYRLNVFPITIPALHRRKEDIPVLVRAFVQRFAGEQKLARPLGVSAGAMALLTAYDWP
GNIRQLENAIFRAVVLAEGDELTAADFPQIAAQVPGYGLAENGGVNFEAVAARAPEHSMD
SRLPGVYPDFRAAEPVETTPDNAIASVDRGGHVRKLADVEEELIRFALKFYHGQMSQVAR
KLGIGRSTLYRKLKDYGIDPDDPMKEAA
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
gtgacggcccatattcttgtcatcgatgacgatcctgtccagcgccggcttctcaagaac
atgatcgagcgttccggccatgtcgcccatatggcggaaaacggccgtgcgggcctcgat
ctgctcgatcgcaaaggcggcctaatcaatgtgatcctgctcgacctgatgatgccggag
atgaacggtaccgcgtttctcgaagtgctcgccgagcgcgagaacaccattcccgtcatc
gtgcagacggggcagggcggcatcgagacggtcgtcatggccatgcgcgccggcgccttc
gatttcgtggtgaagccggtgtcgccggagcgcctgggcgtcgccgtcggcaatgcgctc
aagatggaccagcgcgaaggccgcagccgcgccgggcgccgcaaccgggccgagacgatc
catttcgaggacatcatctcggcgagcccggaaatgctgcgggtcatcgagcttggccgc
cgcgccgcgcagtccaatattccggtcgtgctggaaggcgagtcgggcgtcggcaaggaa
atggtggcgcgcgccatccaggccgccagcgaccgggccaacaagccttttgtcaccgtc
aattgcggcgccattccgcacaatctggtcgagagcatcctgttcggccatgagaagggt
gccttcaccggcgcgaccgagcgacataccggcaagttcatggaggccgacggcggcacg
ctgttcctcgacgagatcggcgacctgccgctcgaagtgcaggtgaagctgctgcgcgcc
gtgcagcagggcgagatcgagacgatcggcgcccgcttcccgcaaaaggtcaatgtgcgc
ctgatctcggcaaccaaccgtgacctgatcaacgaggtgcgcgaggggcgcttccgcgag
gacctctactatcgcctgaacgtcttcccgatcacgattcccgcgctgcaccgccgcaag
gaggacattccggtcctggtgcgtgccttcgtccagcgcttcgcaggcgagcagaagctt
gcccggccgcttggcgtatcggccggcgcgatggcgcttttgacggcctatgactggccg
ggcaatatccgccagctggaaaatgccatcttccgcgccgtggttctggcggaaggcgat
gagctgacggccgcggacttcccgcagatcgcggcgcaggttcccggctacggccttgcg
gaaaatggcggggtgaatttcgaagccgtagccgcccgtgcgccggagcattccatggac
agccgcctgcccggcgtctatccggatttccgcgccgccgagcccgtggagacgacgccc
gacaatgccattgcgagcgtcgacaggggcggccatgtgcgcaagctggccgatgtggag
gaggaactgatccgctttgcgctgaagttctatcatggccagatgagccaggttgcccgc
aaattgggcatcgggcgttcgactctctaccggaaactgaaggactatggcatcgatcct
gacgatccgatgaaggaagctgcgtaa
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