Shinella oryzae: K6301_13065
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Entry
K6301_13065 CDS
T08112
Symbol
fdhF
Name
(GenBank) formate dehydrogenase subunit alpha
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
soj
Shinella oryzae
Pathway
soj00630
Glyoxylate and dicarboxylate metabolism
soj00680
Methane metabolism
soj01100
Metabolic pathways
soj01120
Microbial metabolism in diverse environments
soj01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
K6301_13065 (fdhF)
09102 Energy metabolism
00680 Methane metabolism
K6301_13065 (fdhF)
Enzymes [BR:
soj01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
K6301_13065 (fdhF)
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Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Molydop_binding
Fer2_4
NADH-G_4Fe-4S_3
Molybdop_Fe4S4
Fer4_7
Fer4
Fer4_Nqo3
Fer4_21
Fer4_6
Fer4_10
Fer4_2
Fer4_9
Fer4_15
Fer4_16
Fer4_4
TPP_enzyme_M
Motif
Other DBs
NCBI-ProteinID:
UPA24073
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All DBs
Position
2680442..2683321
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AA seq
959 aa
AA seq
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MPLVPEIDYGTPASRSEKMVTLTIDGNEITVPEGTSIMRASMEAGIQVPKLCATDMVDAF
GSCRLCLVEIEGRNGTPASCTTPVAPGLVVHTQTGRLKDIRKGVMELYISDHPLDCLTCA
ANGDCELQDMAGAVGLRDVRYGYEGDNHVKARNNGEANARWMPKDESNPYFTYDPSKCIV
CSRCVRACEEVQGTFALTIEGRGFDSRVSPGMHEHFLESECVSCGACVQACPTATLTEKS
VIEIGQPEHSVVTTCAYCGVGCSFKAEMRGEELVRMVPWKDGQANRGHSCVKGRFAYGYS
THRERILNPMIREKISDPWREVTWEEAYAHVASEFRRIQYQYGRDSIGGITSSRCTNEET
FLVQKLIRAGFGNNNVDTCARVCHSPTGYGLGQAFGTSAGTQNFDSVEFTDVVIVIGANP
TDAHPVFGSRLKKRLRKGAKLIVIDPRRTELVSSPHIKASYHLPLKPGTNVAVVTALAHV
IVTEGLCDEAFIRERCDWSEFEDWASFVAEPRHSPEETEAFTGVPAEALRGAARLFATGG
NGSIYYGLGVTEHSQGSTTVMAIANLAMATGNIGRPGVGVNPLRGQNNVQGSCDMGSFPH
ELPGYRHISDDATRDIFEKLWGVKLNNEPGLRIPNMLDAAVEGTFKGIYIQGEDILQSDP
DTKHVAAGLAAMECVVVQDLFLNETANYAHVFLPGSTFLEKDGTFTNAERRINRVRRVMT
PKNGYADWEVTQNLAKAMGLDWTYTHPSEIMDEIAATTPSFALVSYDYLDKVGSVQWPCN
EKNPLGSPIMHTNGFVRGKGKFIRTEYVATDEKTGPRFPLLLTTGRILSQYNVGAQTRRT
DNVTWHEEDRLEIHPHDAENRGIREGDWVRLSSRAGDTTLRALITDRVAPGVVYTTFHHP
TTQANVITTDFSDWATNCPEYKVTAVQISPSNGPSDWQVEYDELARRSRRIKGKLEAAE
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcgttcccgaaatcgattacggcacccccgcctcccgctcggaaaagatggtg
acgctcaccatcgacggcaacgaaatcaccgtccccgaaggcacgtccatcatgcgcgcc
tcgatggaggccggcatccaggtgccgaaactctgcgccaccgacatggtggatgccttc
ggctcctgccggctctgtcttgtcgaaatcgaaggccgcaacggcacgccggcctcctgc
acgacgccggtcgcacccggcctcgtcgtccacacccagaccggccgcctgaaggacatc
cgcaagggcgtgatggagctctatatctccgatcacccgctcgactgtctcacctgtgcg
gccaacggcgactgcgaattgcaggacatggccggcgccgtgggcctgcgcgacgtgcgc
tacggttatgagggcgacaaccacgtcaaggcgcgcaacaatggcgaagcaaacgcccgc
tggatgccgaaggacgaatccaacccctatttcacctacgacccgtccaagtgcatcgtc
tgttcgcgctgcgtgcgcgcctgcgaggaggtccagggcacctttgcgctgaccatcgaa
ggccgcggtttcgacagccgcgtttcgcccggcatgcacgagcatttcctcgaatccgaa
tgcgtttcctgcggcgcctgcgtgcaggcgtgcccgacggcgacgctgaccgaaaagtcg
gtgatcgagatcggccagccggagcattccgtcgtgacgacctgcgcctattgcggcgtc
ggctgttccttcaaggcggaaatgcgcggcgaagaactcgtgcgcatggtgccgtggaag
gacggacaggccaatcgcggccattcctgcgtcaagggccgcttcgcctatggctactcg
acccaccgcgagcgcatcctcaacccgatgatccgcgagaagatctccgatccctggcgc
gaagtgacctgggaagaggcctacgcacatgtcgcctccgagttccgccgcatccagtac
cagtacggccgtgattccatcggcggcatcacctcgtcgcgctgcacgaacgaggaaacc
ttcctcgtccagaagctcatccgcgccggcttcggcaacaacaacgttgatacctgcgcc
cgcgtctgccattcgcccacgggctatggcctcggccaagccttcggcacgtctgccggc
acgcagaacttcgacagcgtcgaattcaccgacgtcgtcatcgtcatcggcgccaacccc
acagatgcccaccccgtcttcggctcgcgcctcaaaaagcgcctgcgcaaaggcgccaag
ctcatcgtcatcgatccgcgccgcacggagctcgtgtcgtcgccgcatatcaaggcatcc
taccacctgccgctgaagcccggcacgaacgttgccgtcgtcaccgcgctcgcccatgtc
atcgtgacggagggcctgtgcgacgaggcgttcatccgcgagcggtgcgactggtcggaa
ttcgaggactgggcgtccttcgtcgccgaaccgcgccacagccccgaggaaacggaagcc
ttcaccggcgttccggccgaagcgctgcgcggcgcagcccgcctcttcgccaccggcggc
aacggctcgatctattacggtctcggcgttaccgaacacagccagggctcgaccacggtc
atggccatcgccaacctcgccatggcgaccggcaatatcggccgtcccggcgtgggcgtg
aacccgctgcgcggccagaacaacgtgcagggctcgtgcgacatgggctcgttcccgcac
gaactgcccggctatcgccacatctccgacgacgcgactcgcgatatcttcgagaagctg
tggggcgtgaagctcaacaacgagccgggcctgcgcattcccaacatgctggatgccgcc
gtcgagggcacgttcaagggcatctacattcagggcgaggatatcctccagtccgacccg
gacaccaagcacgtcgctgccgggctggctgcgatggaatgcgtcgtcgtgcaggacctg
ttcctcaacgagaccgcgaactacgcccatgtcttcctgccgggttccaccttcctggaa
aaggacggcaccttcaccaatgcggagcgccgcatcaaccgcgtgcgccgcgtcatgacg
ccgaagaacggctatgccgactgggaggtcacgcagaacctcgccaaggccatgggcctc
gactggacctacacgcatccttccgagatcatggacgagatcgccgcaacgacgccgagc
ttcgcgctggtgtcctatgattatctcgacaaggtaggctccgtgcagtggccctgcaac
gagaagaacccgctcggctcgccgatcatgcataccaacggcttcgtccgcggcaagggt
aagttcatccgcacggaatatgtcgccaccgatgagaagaccggtccgcgcttcccgctg
ctgctcaccaccggccgcattctcagccagtacaatgtcggcgcccagacacgacgcacc
gacaacgtcacctggcatgaggaggaccggctggagatccatccgcacgatgccgagaac
cgcggcatccgcgagggtgactgggtgcggctctccagccgcgccggcgacacgacgctt
cgcgcactcatcaccgatcgcgtcgcaccgggcgtcgtctacacgaccttccaccacccg
acgacgcaggcaaacgtcatcaccaccgatttctcggactgggcgacgaactgccccgag
tataaggtgacggccgtgcagatctcgccgtcgaacggaccgtccgactggcaggtcgaa
tatgacgagctcgcccgccggtcgcgccgcatcaagggcaagctggaggcggcggaatag
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