Shinella oryzae: K6301_13580
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Entry
K6301_13580 CDS
T08112
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
soj
Shinella oryzae
Pathway
soj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K6301_13580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soj03400
]
K6301_13580
Enzymes [BR:
soj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K6301_13580
DNA repair and recombination proteins [BR:
soj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K6301_13580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
PriA_C
DEAD
ResIII
Zn_ribbon_PriA
Helicase_C
Zn_ribbon_6
AAA_30
Zn_ribbon_FGT1_2
DUF7129
Motif
Other DBs
NCBI-ProteinID:
UPA24167
LinkDB
All DBs
Position
complement(2781032..2783236)
Genome browser
AA seq
734 aa
AA seq
DB search
MSSDSTDLFGDKLFPRTVPVMVPVPTPVPYSYTVPDGMAVQPGSIVQVPLGPRLVPGVVW
DGGDDGKVDPKKLRPIEKVFDCPPLSKEMRDFLDWVSAYTVTPPGLVTRMALRAPTAFDP
EPMIEGLRFTGQRPERLTSARERVLELVEDGLPWTRSGLAHASGTSTSVVDGLVKQGTFE
TVFLPPPPVVAPPDPDYVAPRLEGPQTESAAELIESVRKGEFSVSLIDGITGSGKTEVYF
EAIAETLRKGRQVLILLPEIALTASFLERFQDRFGAKPAEWHSDLAPRTREKVWRQVTTG
DVRVVAGARSALFLPFENLGLVIVDEEHDPAYKQEDRVFYNARDMAVVRARIGDFPAVLV
SATPSVESRVNSDVGRYRKLHLPTRYGDAALPDLHLIDMRRHPPARGGFLSPIMLRGIAR
TIEKEQQALLFLNRRGYAPLTLCRVCGHRFQCPQCSSWLVEHRFRGQIQCHHCGYAERTP
EACPECGTFDHLAACGPGVERIAEEVERHFPEARTIVLSSDLMGVKRLRLELEAIARGEA
DIVIGTQLVAKGHNFPLMSLVGVVDADLGLSNGDPRAAERTFQLLSQVTGRAGRSGLKSH
GLIQTYQPTHPVMQAIVSGDAQAFYDREIGEREKALLPPFGRLASVIVSADSRNEAEAHA
RGLRQAAPHADGISILGPAEAPLALVRGRHRFRLLVHGRRGSEMQAFLRAMLANGPKERA
SIQVQLDIDPQSFL
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgattcgaccgaccttttcggagacaaactctttccgcgcacggtgcccgtc
atggtgccggtgccgacgccggtgccctattcctatacggtgcccgacggcatggcggtt
cagccgggctcgatcgtgcaggtgccgctcgggccacggctggtgcccggcgtcgtgtgg
gacggcggcgatgacggcaaggtcgatccgaagaagctcaggcccatcgagaaggtcttc
gattgcccgccgctgtcgaaggaaatgcgcgatttcctcgactgggtttccgcctatacc
gtcacgccgcccggtttggtgacgcgcatggcgctgcgcgcgccgaccgccttcgatccc
gagccgatgatcgaggggctgcgcttcaccggccaacggccggagcgcctgaccagtgca
cgcgagcgcgtgctggaactggtcgaggatggccttccctggacgcgttcggggctggcc
cacgcctcgggcacctcgacgagtgtcgtcgacggactggtcaaacagggcacgttcgaa
acggtcttcctgccgccgccgcccgtcgttgcgccgcccgaccccgattatgtcgcgccg
cggctggaggggccgcagacggaaagtgcggccgaactcatcgagagcgtgcgcaagggt
gaattctcggtgtccctgatcgacggcatcaccggctcgggcaagacggaggtgtatttc
gaggcgattgccgagacgttgcggaagggccggcaggtgctgatcctgctgccggaaatc
gcgctgacggcgagcttcctcgaacgcttccaggatcgcttcggcgccaagcccgccgag
tggcattcggatcttgcgccgcgcacccgcgaaaaggtctggcggcaggtcacgacgggg
gatgtccgggtggtcgccggcgcgcgctccgcactcttcctgcccttcgagaatctcggc
ctcgtcatcgtcgacgaggagcacgaccccgcttacaagcaggaagaccgcgtcttctat
aatgcgcgcgacatggcggtggtcagggcgcgcatcggcgattttccggccgtgctcgtc
tcggcgacaccatcggtggaaagccgcgtcaacagcgatgtcgggcggtaccggaaactg
catctgccgacgcgctatggcgatgcggcgctgccggatctgcatctcatcgacatgcgc
cgccatccgccggcgcggggcggctttctctcgcctatcatgctgcgcggcattgcacgc
accatcgagaaggaacagcaggcgctgctcttcctcaaccggcgcggctacgccccgctg
acgctttgccgggtttgcggccatcgcttccagtgcccgcagtgctccagctggctggtg
gagcatcgcttccgcgggcagatccagtgccaccattgcggctatgccgagcgcacgccc
gaagcctgcccggaatgcggcacgttcgaccatcttgcggcctgcgggccaggcgtcgag
cgcatcgcggaggaggtggagcggcatttcccggaggcgcggaccatcgtgctttcctcc
gatctgatgggcgtgaagcggctcaggctggagctggaagcgatcgcgcgcggcgaggcg
gatatcgtcatcggcacgcagctcgtggccaaggggcacaatttcccgctgatgtcgctg
gtcggcgtggtggacgcggatctcggcctgtcgaacggcgatccgcgggcggccgagcgc
acgttccagctgctgtcgcaggtgacgggccgcgcgggtcgctccggcctcaagagccac
ggcctcatccagacctatcagccgacacatccggtcatgcaagccatcgtctccggcgac
gcgcaggccttctacgaccgcgagatcggcgagcgggaaaaggcgctcctgccacccttc
ggccggctcgcctccgtcatcgtctcggccgacagccgcaacgaggccgaagcgcatgcg
cgcgggctgcgccaggcggccccccatgcggacggcatctcgatcctcgggccggcggag
gcgccgctcgcgctggtgcgcggccgtcatcgcttccgccttctggtgcacggccggcgc
ggaagcgagatgcaggccttcctgcgcgcgatgctcgccaatgggccgaaggagcgcgcg
tcgatccaggtccagctcgacatcgatccgcagagcttcctctga
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