Shinella oryzae: K6301_13970
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Entry
K6301_13970 CDS
T08112
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
soj
Shinella oryzae
Pathway
soj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K6301_13970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soj03400
]
K6301_13970
Enzymes [BR:
soj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
K6301_13970
DNA repair and recombination proteins [BR:
soj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
K6301_13970
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
UPA24240
LinkDB
All DBs
Position
complement(2857828..2858634)
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AA seq
268 aa
AA seq
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MALSIATWNINSVRLRMPLVEHFLKTFSPDILCLQETKCPNDQFPSKPLKALGYEHIVMH
GQKGYHGVATVSRLPLTELVERRDYCGVGDARHVSVLFHHRGKSIRLHNFYVPAGGDEPD
RTINVKFGHKLDFIEEMKLLHAEAEAGISSILVGDLNIAPLEHDVWSHKQLLKIVSHTPI
ETEGLIDVMTKGAWVDLMRRKVPETEKLYTWWSYRSADWQAANKGRRLDHIWSSADLEPH
LSNIAVIREARGWERPSDHVPVIAEFDF
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atggcactttcgattgcgacgtggaacatcaactccgtgcggctgcgcatgccgctcgtc
gagcatttcctcaagacgttttcacccgatatcctgtgcctgcaggaaaccaagtgcccg
aacgaccagttcccctcgaagccgctgaaggcgctcggttacgagcatatcgtcatgcat
ggccagaagggctatcacggcgtcgccaccgtctcgcgcctgcctttgacggagctggtc
gagcggcgcgattattgcggtgtgggcgatgcgcgccatgtctcggtgctgttccaccac
cggggaaagtcgatccgcctgcacaatttctatgtgccggccggcggcgacgagccggac
cgcaccatcaatgtgaaattcggccacaagctcgatttcatcgaggagatgaagctcttg
catgcggaggctgaggccggcatctcctccatcctcgtcggcgacctcaatatcgcgccg
ctggagcatgacgtgtggtcgcacaagcagctcctgaagatcgtcagccacacgccgatc
gagaccgagggcctgatcgacgtgatgacgaagggcgcctgggtcgacctgatgcggcgc
aaggtgccggagaccgagaagctctatacgtggtggagctaccgttcggccgactggcag
gctgccaacaagggccgccgcctcgaccatatctggtcgtccgccgatctcgagccgcat
ctttccaacatcgccgtcatccgtgaggcgcgcggctgggaacggccgtccgaccacgtg
cctgtcattgcggaattcgatttctga
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