Shinella oryzae: K6301_14280
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Entry
K6301_14280 CDS
T08112
Name
(GenBank) autoinducer binding domain-containing protein
KO
K07782
LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
Organism
soj
Shinella oryzae
Pathway
soj02020
Two-component system
soj02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K6301_14280
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
K6301_14280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
soj03000
]
K6301_14280
Transcription factors [BR:
soj03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
K6301_14280
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autoind_bind
GerE
HTH_23
Sigma70_r4_2
HTH_31
Motif
Other DBs
NCBI-ProteinID:
UPA24297
LinkDB
All DBs
Position
complement(2923313..2924053)
Genome browser
AA seq
246 aa
AA seq
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MKVNLLVQFLALLEETRDRAETTSEFQRLLEFYGFDYYAVVRVPLPVDTPDALLLAGRWP
KGWPETYVRKRYMQVDPTVRYLGHAREGFRWRDTLDVYRASPDRKRMERMMVDARQNGLE
DGYIFPVHGRRGLLGSLSLGGRPVDLESIEMSLFDGIARRLFWKLIHEIDPEMAARSSAV
VDVDLTRREMEALMLLGAGMTSPEIGRELGISSHTVDWYMNGIQEKLGARNRHHAIAIAF
RLGLVS
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcaatttgctggtgcagtttcttgcactgcttgaggagacgcgcgatcgcgcg
gagacgacgtccgagttccagcgcctgctcgaattctatggtttcgattattacgccgtc
gtccgcgtgccgcttccggtggacacgcccgacgcgctgcttctggccggccgctggccg
aagggctggcccgagacctatgtgcgcaagcgctacatgcaggtcgatccgaccgtccgc
tatctcggccatgcgcgggaagggttccgctggcgcgacacgctcgatgtctatcgcgcc
agtcctgaccgcaagcgcatggagcgcatgatggtggatgcccgccagaacgggttggag
gacggctatatcttcccggttcacggccggcgcggcctcttgggcagcctcagcctgggc
gggcggccggtggatctcgaaagcatcgagatgagcctgttcgacggcatcgcccggcgc
ctcttctggaagctgatccacgagatcgatccggagatggcggcgcgctcctccgcggtc
gtcgacgtggacctgacgcgtcgcgagatggaggcgctgatgctgctgggcgcgggcatg
acctcgcccgagatcggccgggagctgggcatttccagccataccgtcgactggtacatg
aacggcatccaggagaagctcggcgcgcgcaaccggcaccatgccatcgcgatcgcgttc
cggctggggctcgtttcgtga
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integrated database retrieval system
