Shinella oryzae: K6301_14475
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Entry
K6301_14475 CDS
T08112
Symbol
lsrB
Name
(GenBank) autoinducer 2 ABC transporter substrate-binding protein LsrB
KO
K10555
AI-2 transport system substrate-binding protein
Organism
soj
Shinella oryzae
Pathway
soj02010
ABC transporters
soj02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
K6301_14475 (lsrB)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
K6301_14475 (lsrB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
soj02000
]
K6301_14475 (lsrB)
Transporters [BR:
soj02000
]
ABC transporters, prokaryotic type
Saccharide, polyol, and lipid transporters
AI-2 transporter
K6301_14475 (lsrB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_4
Glyco_tran_WecG
Peripla_BP_1
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
UPA24334
LinkDB
All DBs
Position
complement(2974033..2975064)
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AA seq
343 aa
AA seq
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MIKSMLKSGALAAALVAGTMLASGTAHAENQIAFIPKLVGVGFFTSGGAGATKAGEELGV
KVTYDGPTEPSVSGQVQFINNFVNQGYNALVVSSVSPDGLCPALKRAMDRGVLVMTWDSD
VNPDCRSYYINQGTPEQLGGLLVDMAAEGVTKEKAKVAFFYSSPTVTDQNAWAEAAKAKI
AKEHPGWEIVTTQYGYNDAQKSLQTAESILQTYPDLDAIIAPDANALPAAAQAAENLKRA
EGVTIVGFSTPNVMRPYIERGTIQRFGLWDVTQQGKISVYVADHVLKNGPMKVGDKLEIP
GVGTVEVSANKVQGYDYEADGNGIILLPERTVFTKDNIANFDF
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagtccatgttgaaatccggtgctctggccgccgcgctcgttgccggcaccatg
ctcgcctcgggcacggcccatgccgaaaaccagatcgccttcatccccaagctggtgggt
gtcggcttcttcacctccggcggcgccggcgcgacgaaggcgggcgaggagctcggcgtg
aaggtcacctatgatggcccgacggaacccagcgtttccggccaggtgcagttcatcaac
aacttcgtcaaccagggctacaatgcgctggtcgtctcctccgtctcgccggacggcctg
tgcccggcgctgaagcgcgccatggaccgcggcgtgctcgtgatgacctgggacagcgac
gtcaacccggattgccgcagctactacatcaaccagggcacgcccgagcagctcggcggc
ctgctcgtcgacatggcggccgaaggcgtgacgaaggaaaaggccaaggtcgccttcttc
tattccagcccgaccgtgacggaccagaacgcctgggcagaagccgccaaggcgaagatc
gccaaggagcatccgggctgggaaatcgtcaccacccagtacggctataacgacgcgcag
aagtcgctgcagacggccgaaagcatcctgcagacctatccggatctcgacgcgatcatc
gcgcccgatgccaatgccctgccggccgccgcgcaggccgcggagaacctgaagcgcgcc
gaaggcgtcaccatcgtcggcttctccacgcccaacgtcatgcgcccctatatcgagcgc
ggcaccatccagcgcttcggcctgtgggatgtcacgcagcagggcaagatctcggtctat
gtcgccgatcatgtcctgaagaacggcccgatgaaggtcggcgacaagctggaaatcccc
ggcgtcggcaccgtcgaagtctcggccaacaaggtgcagggctacgactacgaagccgac
ggcaatggcatcatcctgcttcccgagcgcacggtcttcaccaaggacaatatcgccaac
ttcgacttctga
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