Shinella oryzae: K6301_16200
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Entry
K6301_16200 CDS
T08112
Symbol
mutM
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
soj
Shinella oryzae
Pathway
soj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K6301_16200 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soj03400
]
K6301_16200 (mutM)
Enzymes [BR:
soj01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
K6301_16200 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
K6301_16200 (mutM)
DNA repair and recombination proteins [BR:
soj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
K6301_16200 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
UPA24648
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All DBs
Position
3323524..3324414
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AA seq
296 aa
AA seq
DB search
MPELPEVETVKRGLAPVMEGARIKRAELRRPDLRFPFPPAFSEALEGQKILSLGRRAKYL
LVDLEGGDVVIAHLGMSGSFRVEGPALEETPGDFHMPRSKDPRHDHVVLHLETGDGERRV
IYNDPRRFGFMDLARREDIAAHAFFRDLGAEPTGNSLDADYIAAKFRGRQTPLKAALLDQ
KNIAGLGNIYVCEALWRAHLSPERLAGTLVTAAGKPKKELVALTEAIRQVIADAIEAGGS
TLRDHIRTDGSLGYFQHTFSAYDREGEPCRTPGCTGTIGRIVQSGRSTFHCAVCQK
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgccggaagtggaaaccgtcaagcgcggcctcgcgcccgtgatggaaggt
gcgcggataaaaagagccgaactgcgccgtccggatttgcgctttccctttccacccgcc
ttctccgaggcgctcgaaggccaaaagatcctgtcgctcggccggcgcgccaaatacctg
ctggtcgatctcgagggcggcgatgtggtgatcgcgcatctgggcatgtccggctcgttt
cgcgtggaaggccccgcattggaagagacgccgggcgattttcacatgccgcgcagcaag
gacccgcgccacgaccatgtcgtgcttcacctggagacgggggacggcgagcgccgggtc
atctacaacgatccccgccgcttcggcttcatggatcttgcccggcgcgaggatatcgcc
gcccatgccttcttccgcgatctcggtgccgagccgacgggcaacagcctggacgccgat
tatatcgcggcgaagttccgcggccggcagacgccgctgaaggcggcgctgctcgaccag
aagaacattgccggcctcggcaatatctatgtgtgcgaggcgctctggcgcgcgcatctt
tcgcccgaacggctggcgggaacgctggtgacggcggcgggcaagccgaagaaggaactg
gtcgcgctgaccgaggcgatccgccaggtcatagcagacgccatcgaggccggcggctcc
accctgcgcgatcacatccgcaccgacggttcgctcggctacttccagcacaccttctcc
gcctatgaccgcgagggcgagccttgccggacaccgggctgcacgggcactatcgggcga
atcgtccagagcggccgctcgaccttccattgcgcggtctgccagaaataa
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