KEGG   Shinella oryzae: K6301_17640
Entry
K6301_17640       CDS       T08112                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
soj  Shinella oryzae
Pathway
soj00010  Glycolysis / Gluconeogenesis
soj00020  Citrate cycle (TCA cycle)
soj00260  Glycine, serine and threonine metabolism
soj00280  Valine, leucine and isoleucine degradation
soj00310  Lysine degradation
soj00380  Tryptophan metabolism
soj00620  Pyruvate metabolism
soj00630  Glyoxylate and dicarboxylate metabolism
soj00640  Propanoate metabolism
soj00785  Lipoic acid metabolism
soj01100  Metabolic pathways
soj01110  Biosynthesis of secondary metabolites
soj01120  Microbial metabolism in diverse environments
soj01200  Carbon metabolism
soj01210  2-Oxocarboxylic acid metabolism
soj01240  Biosynthesis of cofactors
Module
soj_M00009  Citrate cycle (TCA cycle, Krebs cycle)
soj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
soj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
soj_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:soj00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    K6301_17640 (lpdA)
   00020 Citrate cycle (TCA cycle)
    K6301_17640 (lpdA)
   00620 Pyruvate metabolism
    K6301_17640 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    K6301_17640 (lpdA)
   00640 Propanoate metabolism
    K6301_17640 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    K6301_17640 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    K6301_17640 (lpdA)
   00310 Lysine degradation
    K6301_17640 (lpdA)
   00380 Tryptophan metabolism
    K6301_17640 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    K6301_17640 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:soj04147]
    K6301_17640 (lpdA)
Enzymes [BR:soj01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     K6301_17640 (lpdA)
Exosome [BR:soj04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   K6301_17640 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 GIDA FAD_oxidored FAD_binding_2 NAD_binding_8 FAD_binding_3 HI0933_like AlaDh_PNT_C DAO Thi4 3HCDH_N XdhC_C 2-Hacid_dh_C
Other DBs
NCBI-ProteinID: UPA27380
LinkDB
Position
pZ25:complement(303890..305299)
AA seq 469 aa
MPAYDVIVIGAGPGGYVAAIRAAQLGLRTAVVERRHLGGICLNWGCIPTKSLLHSATLLD
EARHAATFGIRSETPSVDLPTVVARSRSVAGQLNAGVQFLLRKNKVDVIWGAAEVLAPGM
VRVTAGEGEAPKITLAPGDYDAAHIIIATGASERRLPGIVPDGERIWSYHHAMTPAALPA
SLAIVGGGAIGVEFASLYNSLGAKVTLIERLARILPQEDAEVAEQMSKSLRKRGIEVLTG
VEISQIASDVTGVTVRLGNPDGPREITAEKLLSAAGVVANVEGLGLEKLGAALRNGTIAT
DAVGRTSIAGLYAIGDVAGPPMLAHKAEHEGVRCVEAIAGRGSHAAMGPVPSCIFAAPQV
ASIGLTEEAAMDRGLVVDIGRFAFRGNGKAVTIGEADGFVKVLFDKMSGRLVGAHMIGPS
VSELVSVFSLALTMGATRDHLLHTIFPHPTLSEALHEATLASDSRAIHA
NT seq 1410 nt   +upstreamnt  +downstreamnt
atgccggcctatgatgtcattgtgatcggcgcggggccgggcggctacgtcgcggccatt
cgtgcggcgcagctgggtctgaggacggcggttgtcgagcgccggcatctcggcggcatc
tgcctgaactggggctgcattcccacgaagtcgctgctccattctgcgacccttctggat
gaggctcgtcatgctgcaaccttcggcattcgaagcgaaacgccctccgtcgatcttccc
accgttgtcgcgcgttcgcgctcggtcgccggccagctcaatgcgggtgtgcagttcctg
ctgcgtaagaacaaggtcgacgtcatctggggcgccgccgaagtcctggcgcccggaatg
gtgcgagtcacggcgggtgagggcgaagcgccgaagatcacgcttgcacccggcgattac
gatgcggcacacattatcatcgccactggcgcctctgaacgccgcctgccaggcatcgtt
cccgatggcgaacgcatctggtcctatcatcatgcgatgacgccagcggcgctgccggct
tccctagcaattgtgggtggcggcgccatcggcgtggagtttgccagcctctacaattcg
ctcggcgcgaaagtgacgctgatcgagcgcctcgcgcgtatccttccgcaggaagacgcc
gaagtggccgagcagatgagcaagtccctgcgcaagcggggcatcgaggttctgaccggc
gttgagatttcgcagatcgcgtccgatgtaaccggcgtgaccgtacgccttggcaatcca
gatggtcctcgcgaaatcacagccgagaagcttctttccgccgcgggtgtcgtggcaaac
gtcgaggggcttggcctagaaaagttgggggccgccctgcgcaatggcacgatcgctacc
gatgcagtcggccggaccagcattgccgggctatatgctatcggcgacgttgccggcccg
cccatgctggcacacaaggccgagcatgagggcgtgcgctgcgtcgaggcgatcgcgggc
cgtggatcgcacgctgccatggggccagtcccgtcctgcattttcgccgcgccgcaggtg
gcctcgattgggctgacggaagaggcggcgatggacaggggcctcgtcgtcgatatcggc
cgcttcgcttttcgcggaaacggcaaggcggtgaccattggcgaagcagacggtttcgtc
aaagtcctgttcgacaagatgagcggtcgactcgtcggcgcgcacatgatcggtccctcg
gtcagcgagctcgtgtccgtcttttctctcgcgctgaccatgggcgcgacacgcgatcat
cttctccacacgatatttccccatcctacgctgtcggaagcgctgcatgaggctacgctg
gcctccgattcacgcgcgattcacgcatag

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