Shinella oryzae: K6301_17960
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Entry
K6301_17960 CDS
T08112
Name
(GenBank) ABC transporter substrate-binding protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
soj
Shinella oryzae
Pathway
soj02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
K6301_17960
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
soj02000
]
K6301_17960
Transporters [BR:
soj02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
K6301_17960
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
SBP_bac_1
SBP_bac_6
SBP_bac_11
Motif
Other DBs
NCBI-ProteinID:
UPA27437
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All DBs
Position
pZ25:complement(382273..383325)
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AA seq
350 aa
AA seq
DB search
MKTIVKSGILAAAAVALSASLVLPAAARDLTVVSWGGNYQDAQRNIYFKPFSEKIGKPVL
DEAWDGGIGVIQSKVKAGAPNWDAVQVEAEELALGCADGLYEKIDWDKMGGKDKFLDSAV
NDCGVGAIVWSTAIAYDGDKLAEGPKSWADFWNVEKFPGKRSLRKGPKYTLEFALLADGV
SKDELYDVLSTEEGVERAFKKLDELKPNIVWWESGAQPIQFLASGEVAMTSAYNGRITGI
NRTEGKNFKVVFPGSIYAVDSWVVLKDAENKDVAQDFIAFASQPENQAKLPESVAYGLPN
KEAAAMVPAELAKDLPTDPANLPEAIALNVDFWIDNAESLTQRFNAWLAQ
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgatcgttaaatccggaatcctggcggccgctgcggtcgccctctcggcaagc
ctggttcttccggccgctgcgcgggaccttaccgtcgtttcctggggcggcaactatcag
gacgcgcagcgcaacatctatttcaagccgttctccgaaaagatcggcaagccggtgctc
gacgaagcatgggacggcggcatcggcgtcatccagtcgaaggtcaaggccggcgcgccg
aactgggatgccgtgcaggtggaggccgaagaacttgcactcggctgtgccgacggcctt
tacgagaagatcgactgggacaagatgggcggcaaggacaagttcctcgacagcgccgtc
aacgattgcggcgtcggggccatcgtctggtcaacggccatcgcctatgacggcgacaag
cttgccgaggggccgaagtcctgggcggatttctggaatgtcgaaaagttcccgggcaag
cgttcgctgcgcaagggcccgaaatacacgctggaattcgctcttttggccgatggcgtc
tccaaggacgagctctatgacgtgctgtctaccgaagagggtgtcgagcgtgccttcaag
aagctcgatgaactgaagccgaatatcgtctggtgggaatccggtgcgcagccgatccag
ttcctcgcttccggcgaagtcgcgatgacttcggcctataacggccgcatcaccggcatc
aaccgcaccgaaggcaagaacttcaaggtcgtgttccccggcagcatctatgccgtcgac
agctgggtcgttctcaaggatgccgagaacaaggatgtcgcacaggacttcatcgccttt
gcgagccagccggaaaaccaggccaagctgccggaatccgttgcctacggcctgcccaac
aaggaggctgcggccatggtgccggcggagctcgccaaggacctgccgacggatccggcg
aacctgccggaagccatcgcactcaatgtcgatttctggatcgacaacgcggaatcgctg
acgcagcggttcaatgcctggctggcccagtaa
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