KEGG   Shinella oryzae: K6301_21305
Entry
K6301_21305       CDS       T08112                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K10126  two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
Organism
soj  Shinella oryzae
Pathway
soj02020  Two-component system
Brite
KEGG Orthology (KO) [BR:soj00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    K6301_21305
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:soj02022]
    K6301_21305
Two-component system [BR:soj02022]
 NtrC family
  DctB-DctD (C4-dicarboxylate transport)
   K6301_21305
SSDB
Motif
Pfam: Sigma54_activat Response_reg Sigma54_activ_2 HTH_8 AAA_5 AAA_2 AAA_16 FleQ Mg_chelatase HTH_30 T2SSE AAA CUE HTH_23
Other DBs
NCBI-ProteinID: UPA26500
LinkDB
Position
pZ25:1081064..1082419
AA seq 451 aa
MSTPVLLIDDDGQLLHATAQTLELAGFDVTPLARATDALGSIDSGFAGVVVSDIRMPGMD
GLQLFERIRAIDAEIPVILVTGHGDIPTAVKAIQDGVYDFIAKPFPAERLIQCVHRAAEK
RNLVMENRRLKHAARQAEDDFPLIGQTMAMDRLRQTLRQIADTDVDVLVTGETGSGKEVV
ARLLHGWSRRSKGNFVALNCGALPEQVIESELFGHEPGAFTGAQKKRVGRIEHSSGGTLF
LDELESMPLSTQIQMLRVLEMREVTPLGTNEVRPVDIRIVAAAKVDLADPEQRKTFREDL
YYRLNVVSLTIPPLRERHEDIPLLFSYFAERAARRFQREAPPLSAAILKHLAEHDWPGNV
RELSHFAERAVLGMMPPAAPQTTTAPAGGDGGTLPERLERVEAQIIRDTLSAHGGDVQET
IAALGIPRKTFYDKLQRHGIVRRDFTQKTDG
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgagcacacccgttctccttatcgacgacgacgggcagttgctgcacgcgaccgcgcag
acgctggaactggccggcttcgacgtgacgccgcttgcccgcgcgaccgatgccctcggc
tctatagacagcggctttgccggcgtcgtcgtctccgatatccgcatgccgggcatggac
gggctgcaacttttcgagcggatccgcgcaatcgatgccgaaataccggtgatcctcgtc
accggccacggcgacatcccgacggcggtgaaggccatccaggacggcgtctacgacttc
atcgccaagcctttcccggccgaacgcctgatccagtgcgtgcatcgcgccgccgaaaag
cgcaacctggtcatggagaaccgccgcctgaagcacgctgcccggcaggcagaggatgat
tttccgctgatcggccagaccatggcgatggaccgtctgcgccagacgctgcgccagatc
gccgataccgatgtcgacgtgctcgtgacgggcgagacgggcagcggcaaggaggtggtg
gcgcgcctgctgcatggctggagccggcgctcgaagggcaatttcgtcgcgctcaactgt
ggcgccctgcccgaacaggtcatcgagagcgaactgttcggccacgagcccggcgccttc
accggcgcgcagaagaagcgcgtcggccgcatcgaacattccagcggcggcacgctcttt
ctcgacgaactggaaagcatgccgctttcgacgcagatccagatgctgcgcgttctcgag
atgcgtgaagtaaccccgctcggcaccaacgaggtgcgtcccgtcgatatccgcatcgtt
gcggccgccaaggtcgatctcgccgaccccgaacagcgcaagaccttccgcgaggatctc
tattatcgcctcaacgtggtgtcgctgacgatcccgccgctgcgcgagcggcacgaggat
attccactgctgttcagctattttgcagagcgcgcggcgcggcgcttccagcgtgaagcc
ccgccgctgtccgccgccatcctcaaacatctggccgagcacgattggcccggcaacgtg
cgcgaactttcccatttcgcagaacgcgccgtgctgggcatgatgccgcccgccgcgccg
caaacaacgaccgcgcctgccggtggtgacggtggcacacttcccgaacggctggagagg
gtggaggcgcaaatcattcgcgatacgctgtccgcccacggcggcgacgtgcaggagacg
atcgccgcactcggcattccacgcaagactttctacgacaagctccagcgccacggcatc
gtgcgccgcgacttcacgcagaaaacggacggctga

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