Shinella oryzae: K6301_22245
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Entry
K6301_22245 CDS
T08112
Name
(GenBank) autotransporter domain-containing protein
Organism
soj
Shinella oryzae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autotransporter
PATR
Motif
Other DBs
NCBI-ProteinID:
UPA26677
LinkDB
All DBs
Position
pZ25:complement(1300020..1306307)
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AA seq
2095 aa
AA seq
DB search
MTGDTTKRNPRSGVRAPLGALCRQAKAVASSRDLLPFDDIPASRAPAHLPEFARSAVSAL
LASSLVFFGGIEFAHAQFNSFLIGKGGDGAANGDTQSGEAGGGGGGIGGGGGAGGGGGGG
GVGGGGAAVAGSGQTGGGMGGSGIAGGRGGTPNNMIGGWSAGGDGGVGGGGGASVGGNNA
GGGGAIGGAGGSSTLNPGGSGGTRFGGTGQNGSDNQGGRGSFYGGGGGGANPFTASGSGG
GGGALSPILGGAAGSQPGQGANSAQTSNVVTFGPTEVSSFRFMGVGGGGGGGSHQSAGSA
GGAGTLILDGADLSAAYSVLVGGAGGGAGGNLAGGGGAGGNGTLTLVNGATLTVGETLLV
GGSGGGGSGMAQGGAGGSGTMTIAASTLTAGTIALAGENGFGINAEGGAGGAGTLTVSDG
AQVTSDVLTIASSAGSSGTLNIGAATGMAPAHAGTISVPVIAFGDGDGRIVFNHAGNPDG
SDHAFESVMTGAGTIDHLAGNTIFHGSNTTADRFTGTLNLSGGELTVDGVFGDVGSLWGN
AAVNITGGKLAASGTIGATVTVAGGGIFAGSGTVNGSVNVMDGVIEGRTGRTLTVAGNMA
LSANSVMDVTLNRLSFAPIIDVAGYLQLDGTLNVSSTGGLGAGVYRLVDYRGALGDRGLV
IGTVPGGVDPADLSVQTSVARQVNLVVASNMVLGFWDGGDPDLHNNGSVDGGTGIWDSTG
SNWTDQGGSTNGVFQPNPTFAVFQGTGGTVTVDVATGLLGVTGMQFAVDGYRIEGDGLAL
QGANGQTVIRVGNGTVDGAAMTATVSSVLSGASSLVKDDLGTLALTGANTYTGGTELRAG
TLSITSDSALGAAAGGLTFSGGTLSAAADLSSARNIQITGQNKAVFDISADTQASFSGLV
TGTGGMIKRGDGTLSLGGGSAGRNTYSGGTTVEAGTLRLLDSYFAGTGSTLGSGNITMAG
GTTLSFGGSPYRSLGGVLLNGDVTFDVDQGQNAGLWQPVSGTGGLTKTGAGTLTLEGHNT
FLGNVHVREGTLRLDSWSGEANRSIADTARVTVSAGAKVSVDDAETIGELVGDGTVDVAY
AGVTGLTVGGNNTDFVFGGNISGGDATPISPSPSYGLTKTGSGTLTLTGVSDSLRGMQIS
SGTLAVEGSLASSLVDVGTGASLRGSGEIEGTVRVFGGGTLEGSYGTTLSTGGLILARGA
LLNVSLGIPSSTALFSVSGDLALNGTLNVEDAGGFGAGIYRLIDYGGALTGNGLLIGAVP
QGVSPSELTLQTAVAGQVNLVSRVGTPLGFWDGGNASLHANGSIDGGNGTWSLGGANWTD
QSGTVSGPFRPNPTFAVFQGVGGTVTVDGAAGSIGVTGMQFASAGYRIEGDPVMLEGHGG
DTVIRVGDGSQAGAAITTSIASALTGASSLIKADLGTLILTGANSYTGPTVVQGGTLIGD
AASIRNNIRNRGTLVFEQASDARFAGNIGDVSGVRGQMIKRGSGLLTLTGTSTLGWTVEA
GGLTSASDRFLGDVAIASGASFTFEQSYGGSYAGKLTGAGTLSFEGGGAVKLTGDSSGFD
GLTTISGGMLAVNGNLGGSALVDRDGRLQGSGTLGSGASSVVTVADGGTLAPGNSIGTLT
INGSLVMNAGSRFEVEVMPGGTASDRIVVTGTATLDGGTVAHVGMTGAYRPTATYTILSA
AGGVSGRFDAVTSDFAFLDPTLAYTGNDVTLSLTRNQIGFADAGVTRNQIATAEALETLG
FGNALYEQVVQLDAATARTAFDQLSGEIYASAVTGLIEDSRFVRNSANDRIRAAFGDVGA
STAPVTTYGEHGPVLAPAISTEGISVWSSAYGSWGRTDSDGNADAIDRATGGLLMGVDAP
MFDGWRLGLLGGYSHTSVEADARTSSASVGSYHLGLYGGTNWDALSFRSGLAYSRHEIDT
RRTVDFVGFADGLTGSNDAGTVQAFGELGYAIDTTLGRIEPFANLAYVNTHTGRFSERGG
AAALAGLSNDNVVTFTTLGIRGDSTIDFGDVSARLTGMLGWRHALGDTTPEMTHAFAGSN
AFTIAGSPIAQNALAVEVGLSLDLTSNATLGVSYQGQIAGQAQEHGLKANLGIRF
NT seq
6288 nt
NT seq
+upstream
nt +downstream
nt
atgaccggagacacgacaaaacgcaatccgcggagcggcgtgcgagcaccgctgggcgcg
ttatgccgacaagccaaggctgtggcgagttcgcgcgacctgctgcctttcgacgacatt
ccagcgagccgagcgccggcacatttacctgaatttgcaaggtcggcagtctcggcactg
cttgcctcgtcgctcgtgtttttcgggggaatcgaatttgcccacgcgcaattcaacagc
tttttgatcggcaaaggtggcgatggcgctgcaaacggcgatacgcaatcgggtgaagcg
ggtggcggtggtggcggcattggcggcggtggcggcgccggcggcggcggtggtggcggc
ggcgttgggggcggtggcgccgcagtcgcaggcagtggccaaacaggtggcggcatgggc
ggaagcgggatcgccggcggacgcggcgggacccctaacaatatgataggagggtggtcg
gccggcggggatggcggggtcggcggcggcggtggcgcgagcgtgggcggcaacaatgcg
ggcggcggaggcgcgatcggcggagccggtggttcctcaacgcttaatcccggtggaagc
ggtggaacacggtttggaggtaccggccaaaacggcagtgacaatcagggcggcagggga
agcttctacggtggcggcggcggcggcgcgaatccattcaccgccagtggcagcgggggc
gggggtggcgcgctctccccgatcctgggtggcgctgccggctctcaacccggccaaggc
gccaattccgctcagacatcgaacgttgtcaccttcggacccacggaggtgtcctccttc
cgcttcatgggtgtcggcggcggtggtggcggcggaagccatcagtcggctggatcggcc
ggtggcgccggcacgcttatactggatggggcagatctttcggctgcttattccgttctc
gtcggcggcgcagggggcggagccggcggaaaccttgcggggggaggaggtgcgggcggc
aacggcacattgacgctggtgaacggcgccacgttgactgtcggcgaaacccttttggtc
gggggtagtggcggcggtgggtcaggcatggcccagggcggcgcgggtggctccggcacg
atgaccattgcagcaagcacgcttacggccggcaccatcgcactcgcaggggaaaacggc
ttcggcatcaacgcagagggaggagccggcggcgcaggaacgctcacggtctccgatggt
gcgcaggttacgtcagatgtcctcacgattgcctcttccgccggttccagcggcacgctg
aacatcggcgctgccacgggtatggcaccggcgcatgccggaaccatttcggttcccgtt
atcgcttttggagacggtgacgggcgcatcgtcttcaatcacgccggaaaccccgatggg
agcgatcatgcattcgaatctgtaatgacgggtgccgggacgatcgaccaccttgccggc
aacacaatcttccatggctcgaacacgacagccgatcgattcacgggaacgttgaacctg
tccgggggcgagttgaccgtggatggcgtgtttggagacgtcggcagcctatggggcaat
gccgccgtcaatatcacgggtggcaaactggctgcttcaggaaccatcggcgccacggtc
acggttgcgggcggtggcatattcgccggctcaggaacggtcaatggatccgtcaatgtg
atggatggtgtgatcgagggccgaacgggccggacgctcacggtcgccggaaacatggcg
ctcagcgcgaactcggtgatggatgtcacgctcaacaggctctcctttgcgccgatcatc
gatgtggccggatatcttcaattggacggtacactcaatgtgtccagtaccggtggcctt
ggcgccggggtttacaggctggtcgattatcgaggcgcgcttggtgaccgagggcttgtc
attggcaccgtgccgggtggggtggatcccgcagacctctcggtgcaaacgtcagtcgca
cgtcaggtcaatcttgtcgtcgcgagcaacatggtactcggcttctgggacggcggcgat
ccagatctgcacaacaatggcagcgtcgacggcgggaccgggatatgggatagcacggga
agcaactggacagatcaaggcggatcgaccaacggcgttttccagcccaatcccaccttc
gcggtgttccagggcaccggcggcaccgtgacggtggacgttgccaccggcctgcttggc
gtcaccggtatgcagtttgcggtggatggctaccggatagaaggagatggcctggcgctt
caaggtgccaatggccagacggtcattcgtgtcgggaacggaacggtggatggtgcggcg
atgaccgcaaccgtgtcatcggttctcagcggtgcttcttcgctcgtgaaggacgatctc
ggcacactcgcgcttaccggcgcgaacacctatacgggcggcacggagttgcgggcgggc
acgctcagcatcaccagcgacagcgcgctcggtgccgcggccggcggcctgacattctcc
gggggaacgctgtctgccgcggcggacctatcgagcgccaggaatatccagatcaccgga
caaaacaaagccgtcttcgacatttcggcggatacacaggcgagcttctccggtctcgtc
accggcactggcggaatgatcaaacgcggtgacggaacactcagccttggcggcggcagt
gcaggtcgcaacacctattctgggggcacgaccgtcgaggcgggaacgctgcgcctgctt
gacagctactttgccggtaccggctcgacgctagggagcggcaacatcaccatggccggc
ggcacgacgctgagcttcggcggctctccctaccgcagcctcggcggggttttgctcaat
ggtgacgtgaccttcgacgtcgatcaaggacagaatgccgggctgtggcaacccgtctcg
ggcacgggtggtttgacgaagacgggtgcgggaacgctcaccttggagggccacaataca
tttctcggcaatgtccacgttcgcgaaggaacgctccggctcgatagctggtccggcgag
gccaatcgctcgatcgccgacacggcgcgtgtgacagtgagcgcgggtgcgaaagtcagc
gtggacgatgcggagacaatcggcgaactcgtcggcgatggaacagtggatgttgcatat
gccggcgttaccggcctgaccgttggcggcaacaacacggatttcgttttcggcggcaat
atttccggtggcgacgccactccgatcagcccgtcgccttcgtatggcctgaccaaaacg
ggaagcggtacgctgaccttgaccggcgtcagcgacagtctgcgcggcatgcagatctct
tcagggacactggcggtcgaaggctcgctcgccagttcgctcgtcgacgtcggaaccggc
gcaagcctgcgcggcagcggcgagatcgaagggacagttcgcgtattcggcggcggaacg
ctggaagggtcttacggaaccacgctttcaacgggagggctgatcctggcccggggggct
ttgctgaatgtttctctgggcatcccatcgtcgacggcgcttttttcggtcagcggcgat
ctggcactgaacggcacgttgaatgtcgaagatgcaggcggttttggcgcgggcatctat
cgcctgatcgattatggcggggcgctcacgggcaacggcctcctcatcggcgcggtgccg
cagggcgtgtcgccaagcgagctcacgctgcaaaccgcggtcgcagggcaggtcaatctg
gtgtcccgcgtcggcacgccgctgggcttttgggacggagggaacgcaagcctgcacgcc
aatggcagcatcgatggcgggaacgggacatggagccttggcggtgcgaactggaccgac
cagagcggcacggtgagcggcccgttccgtcccaaccccaccttcgcagtattccagggc
gtcggcggcaccgtaacggtcgatggcgctgcgggatcgatcggtgtgaccggcatgcag
ttcgcgtccgccggataccggatagagggtgatccggtcatgcttgaaggtcacggcggc
gacactgtcattcgcgtcggcgacggttcccaagccggagccgcgatcacgaccagcata
gcatccgccctcacaggcgcatcgtctttgatcaaggccgatctcgggaccctcatcttg
acgggggcgaacagctataccggtccgaccgtggttcaaggcggcacgctcatcggcgat
gcggcatccatccgcaacaatatccgcaatcgcggaacactcgtcttcgaacaggcgtcc
gacgcgcgcttcgcgggtaacatcggcgacgtttccggcgtcagggggcagatgatcaag
cggggttccggccttttgacgctgaccggcacgtctacgctgggttggaccgtggaagcc
ggcggtctgacctccgcttcggaccgcttcctgggcgatgtcgccatcgcatccggtgcg
agcttcacctttgagcagtcttacggtggatcctatgcgggaaaactcacgggtgccggc
accctttccttcgaaggcgggggcgcggtcaagctgaccggcgacagttcaggctttgat
ggactgacgaccatttcgggtggcatgctggccgtcaacggcaatctcggcggctcggcg
ctggtcgatcgggatggccgcctgcagggcagcggcacgctcggctctggtgcaagctcg
gtcgtgaccgtggccgacggtggcacgctcgcaccggggaactcgatcggtaccctcacg
atcaacggcagtctcgtcatgaacgccgggtcgcgctttgaagtcgaagtgatgcccggc
gggacggcgagcgaccggatcgtcgtgacgggcacggccacgcttgatggcggcaccgtc
gcgcatgtcggtatgaccggcgcctatcgcccgaccgccacctatacgatcctctccgcc
gccggtggcgtaagcggtcgcttcgatgcggtcacctcagacttcgcgtttctcgacccg
acgctcgcctacactggcaacgatgttaccctgtcgctgacacgcaaccagatcggcttt
gccgatgcgggtgtaacccgcaaccagatcgccacggccgaggcgctcgaaacgcttggc
ttcggcaacgcgctctacgaacaggtggtgcagctcgatgcggcaacggcccgtacggcc
ttcgatcagctgtcgggcgaaatctatgcttccgctgtcaccggcctgatcgaagacagc
cgctttgttcgcaacagcgcgaatgaccgcattcgcgccgccttcggcgatgtcggcgcg
tccaccgcccctgtcacgacctatggcgagcatggcccggtcctggccccggccatatcc
acagagggcatttccgtctggtcgagcgcctatggctcgtggggcaggaccgacagcgac
ggcaatgccgacgcaatcgaccgcgccacaggcgggctgttgatgggtgtggatgcgccc
atgttcgatggctggcgtctcggcctgctcggcgggtacagccatacctctgttgaggct
gacgcacggacctcttcagcctctgtcggcagctatcatctcggcctctatggcggcaca
aattgggacgcgctgtcgttccgttcagggctcgcctatagccggcatgaaatcgacacc
agacggacggtcgatttcgtcggtttcgccgatggtttgacgggctccaatgatgccggc
acggtccaggctttcggggaactcggatacgccatcgacacaacgcttggacgcattgag
cccttcgcgaaccttgcttacgtcaatacacatacggggcgcttcagcgaacggggtggc
gcggcggcattggcgggtctttcgaacgacaacgtcgttacattcacgacgctcggtatc
cgtggcgacagcaccatcgatttcggggatgtcagtgcacggctgaccggcatgctcggc
tggcggcacgctttgggcgatactacgccagagatgacccatgcgtttgccggctcgaac
gccttcaccatagcgggcagcccgatcgcgcagaacgcccttgccgtcgaggtgggcctc
agcttggacctcacgtccaacgcgacactcggcgtatcgtatcaaggccagatcgcaggt
caggcgcaagagcatggcctcaaggcaaatctcgggatcaggttctga
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