Shinella oryzae: K6301_24270
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Entry
K6301_24270 CDS
T08112
Name
(GenBank) DEAD/DEAH box helicase
KO
K06877
DEAD/DEAH box helicase domain-containing protein
Organism
soj
Shinella oryzae
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09190 Not Included in Pathway or Brite
09194 Poorly characterized
99996 General function prediction only
K6301_24270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
MZB
ResIII
DUF6074
Motif
Other DBs
NCBI-ProteinID:
UPA27016
LinkDB
All DBs
Position
pZ25:1751946..1757450
Genome browser
AA seq
1834 aa
AA seq
DB search
MKAIIDEANPASVFDYVRDAYLRYYDSAFWMRDQAVMEERRSILLADGVMTREPLLEAVP
QYPSTDPIAEACARARLDPFVGNNLARVIFGEADISLRRHQAQSLITAIAGDANGNRNVV
VTSGTGSGKTESFLLPVVASIMQERVHDAGNGEVHRWWRSDLANDKTEWDHSRSRLDGTV
QPAVRALVLYPTNALVEDQISRLRQAAIRALPLFGKPLFYFGRYTGATLGGTFTPPSPLR
STDRSTINEVGREVLKIEAEVGAIRAQMTKRGMPEKEIIETCSQFQDPSIGEMLTRWDMI
AAPPDILITNTSMMNIMLMRSEEAPIFEQTRAWLQSDARNTFTLVVDELHSYRGTQGTEV
ALVVRNMLDRLGLAPNSSQLRCIATSASLDGDSGREYLEQFFGVDRKTFSIFPGDPLGFS
VTLPIDRGLLSSFGPDLVQGGERALAAATEVSKSFSPREAIATACAIAGRSVAIDPTTGE
KRDVVRPAPLGDVSAVLFGDEDARDELTALLVAAKLEDRGTYEKPKPTFRSHMFLRQVQG
MWACSNPECNEIENRFKSARRQFGRLFRSPAMKCGCGGQVLELLYCYDCGEAFLGGYVVP
TTDPMLASFTFLEATRAGEGDGKASQVNERTIDEYRWYWPGGILPRKPSWEHASPSGKPV
RMQFQRGTFNPFSGLLNNDTTPGTGLIFFPPATGLSPGETIAALPEVCPCCLSSKKAINA
QQENRRAFFAGVVKSPVRGLRTGLNVTTQLVADRAMFATGDGSQSEKMIAFTDSRDDAAD
LAAGIELNHYRDLVRQLVHSSLEPKTIPTSVELLQHVGSDPTGDPALKAILDAAEQATPG
IFTAVKLEKFGVADGEHKALIARHDDRVGSPRVGWPTLLEVMATKLVALGQNPAGPRASR
ATDSGEEGGTPWWKFFNPPLPGEWEPAAPDVAQARRRDYMEYFAGEVAVSLFDRAGRDLE
SMATASIEVEGRHGARLGMDDEIANGVLANIVRIIGHARYLAGEKSRGATSIPKIARSYI
EKVSRLSNRDPEELGRSISEYLQERGVINPNWLLQVTNHSTLPLALVPRGKRNLHRCDTC
SRRTMLLPVKACTTPHCESTSFSVVENPSQDYYSWVSREPVHRLAAAELTGQTKPMSKQR
NRQRLFKGTGFLDGESSLVQGIDALSVTTTMEVGVDIGSLKLVMMANMPPQRFNYQQRVG
RAGRAGQAFSYAVTISRGAAHDDFYFNNPERMTGDLPPQPKLDLSRPEIVRRVVASESLR
RAFKSLDPGPRRNVDSIHGTFGRKAEWGPLYRGPVDAWLSTSPEVEDIVLRLLARAPIED
RADELVQYVRTTLVPAIDEATGNTRFIQEELSHLLAVAGILPMFGFPTQVRSLFHDKGKP
SKLEEVVVSDRPLDHAVWAFSPGSEIPKDKQLNTAIGFVLRRDGPNGVTNDPQPLGRPTT
YTRCEEVMCATIAAGGHNQCVTCGGASVAFPLYQPKGFLGAYRRRDYDGERQRGPALPPP
VRAFEQEFGDEGCGPMKIAFRPGPVAVVNDNGGRLFEFFQHTSERVVVRDAALYRDESPP
IDANASTAPYLDRGAIGAVFTTEVLSFFIDGAQGVGRLGVLDTRNQPAARAALASYAELV
KLSLATALDIDPSEFRVGRQALRRADCETEQVFVADALENGAGYARWASDPLNLERAIRG
FHDAVAPKWQATGHSHDCDRSCPDCLRNYGNRFSHGILDWRLALDVADLVLGMPLPLERW
IEDSELKSVLSFSRFCADAGMQVQHGHAGGLSYVSSGKKALVLGHPLWHTEPGYLQPQQI
QARDELRLDGVEAVFVDSRDFSTRMANYYLRLQA
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccatcatcgacgaagccaatccggctagcgtcttcgactatgtccgcgatgcg
tacctgcgatactatgacagcgccttctggatgcgcgaccaagccgtaatggaagaacga
cgatccatattgcttgccgacggcgtcatgacacgcgagccccttcttgaagctgttcca
cagtatccctcgaccgacccgatcgccgaggcttgcgcaagggcacggttggatccattc
gtgggcaacaacctggcgagggtgatttttggggaggccgacatcagcctcaggcggcat
caggcgcaatcacttatcacggcgatcgccggggatgccaatggcaatcgcaatgtcgtc
gtcacgtccgggaccggatctggcaagaccgaaagcttccttcttccggtggtcgcatcc
atcatgcaggaacgcgtgcacgacgcaggaaacggcgaggtgcatcgttggtggaggtcg
gacctggccaacgacaagacggaatgggaccactcgcgctccaggctcgacggcacggtg
cagcctgcggtgcgtgcactcgtcctctatcccaccaacgcgctcgtcgaggaccagata
tcccggcttcggcaggctgcaatccgcgcgctgccattgttcggcaagcccctcttctac
tttgggcgctacactggcgcgacccttggcgggaccttcacgccgccatccccgctccgg
tccacggatcgctcgacgatcaacgaggtcggaagggaagtcctcaagatcgaagccgag
gtcggcgcaattcgcgctcaaatgaccaagcggggaatgcccgagaaggaaatcatcgag
acctgcagccaattccaggacccttccatcggagagatgctcactcgctgggacatgatc
gcggccccgccggacatcctcatcaccaacaccagcatgatgaacatcatgctgatgcgc
tccgaggaagcgccaatcttcgagcagacgcgggcatggttgcagtccgatgcccggaac
acgtttacgcttgtcgtggacgagttgcattcatatcgaggcacgcaggggacggaagtg
gcgctcgtcgtgcgcaacatgctcgatcgcctcggccttgcgccgaactccagccaactt
aggtgcatcgcgactagcgcctcgctcgatggcgactcgggccgagagtacctggaacag
ttcttcggtgtggaccggaagaccttttccatcttcccgggcgatccccttggcttctcc
gttaccctgccaatcgaccgagggcttttgtcctccttcggccccgacctcgtccaaggg
ggcgagcgggcgcttgccgcggccactgaagtatccaagtcgttctctccacgcgaggct
atcgcgacagcctgcgcgatcgccggccgctccgtcgcgatcgatccaacaacgggcgaa
aagcgtgacgtggtgcgtcctgccccgttgggcgacgtttccgcggtgcttttcggcgac
gaggatgcccgggacgagctgactgccttgctcgtcgcggcaaagctcgaggatcgaggc
acctacgagaagcccaagcctacattccgctcgcacatgttcctacgtcaagtgcagggc
atgtgggcgtgctcgaatccggaatgcaacgagatcgagaatcgcttcaagtccgctcga
cgccaattcggaaggctgttcaggtcgcccgcgatgaaatgcggctgcggcggccaggtg
ctcgagctcctctattgctatgattgcggggaggccttcctggggggatacgtcgttccg
accaccgaccccatgctggcaagcttcacctttctcgaggcgacccgtgccggggaaggc
gatggcaaggcaagccaagtaaacgagcgcaccatcgacgaatatcgctggtactggcct
ggtggcatcttgccgcgcaagccgtcatgggaacacgcgtcgccttctggcaagccagtc
cggatgcagttccaaaggggaaccttcaatcccttttcgggtcttctcaataatgatacg
actcctggcacggggctgatcttctttccgcccgccaccggcctttcgcctggcgagacc
attgccgcgctgcccgaggtctgcccttgctgcttgtccagcaagaaggccatcaatgcc
cagcaggaaaaccggcgtgccttttttgcaggagtggtcaagagcccggtgagggggttg
aggacgggcttgaatgtcacgacccagctcgtggccgaccgtgccatgtttgccaccggt
gatggcagccaatcggaaaagatgatcgcgttcacggacagcagggacgacgcggcggac
cttgcagcgggcatcgagctcaaccactatcgcgacctcgtccggcaactggtacattcc
agtcttgagcccaagaccatccccaccagcgtagaattgttgcagcatgtcggtagcgat
cccaccggcgacccagccctgaaggcgatcctagacgccgccgagcaagcaacccctggc
atcttcactgcagtcaagcttgaaaagttcggcgttgcagatggcgaacacaaggcattg
atcgcaaggcatgacgacagggtcggcagtccgcgtgttggttggccgaccttgctcgag
gtcatggcgacgaagctcgtcgcccttggccaaaatccagccggccctcgcgcaagtcgc
gccactgacagcggggaggaaggcgggacgccgtggtggaagttcttcaacccacccttg
ccgggcgagtgggagcctgccgccccagatgttgcccaggcccgccgtcgcgactacatg
gagtactttgccggggaggtcgcggtttccctgttcgacagggcgggccgagacttggaa
tcgatggcgacggcctcgatagaggtcgaggggcgccacggcgcgcggcttggcatggac
gacgagatcgcgaacggcgtcctcgcgaacatagtgcggatcatcgggcacgcacgctac
ctggcaggcgagaagtcccggggggcgacctcgatccccaagatcgcgaggagctacatc
gaaaaggtttcgaggctttccaacagggacccggaagaacttggcaggtcgatttcggag
tacctgcaggaaaggggggtcatcaacccaaactggttgttgcaggtaaccaaccactcg
acacttccgctcgcccttgtcccgagaggcaagcgaaaccttcatcgctgcgacacgtgt
tcgcggcgcacgatgttgctccccgtgaaggcatgcacgacgccccattgcgaatcaacc
agcttttctgtcgtcgagaacccttcacaggactactatagctgggtgtcgagggagccc
gtgcatcgacttgccgcggccgaactcaccggccaaacaaagccgatgtcgaagcagcgc
aataggcagcggctgttcaagggcactggcttccttgatggggagtcatcgctcgtgcaa
ggaattgacgcgctgtccgttacgacgaccatggaggtaggcgtcgacatcggctccctg
aagctggtcatgatggcaaacatgccgccacagcgcttcaactaccaacagcgggttggc
cgcgccggtcgtgcaggccaggccttttcctacgcggtgaccatctcgcgcggggcagcc
cacgatgacttctacttcaacaaccccgagaggatgaccggggacctccctccacaacca
aagctggacctgtcgcggccggaaatcgttaggcgcgtggttgcttccgagagcttgcgc
cgcgccttcaagagcttggatcctggtcctaggcgtaacgttgacagcatccatggaacg
tttggacggaaagcggagtgggggccgctctatcgcgggccagtcgatgcctggctgtcg
acttccccggaggtggaggacatcgtcctgcggctgctcgcgcgcgctccgatcgaggat
agggcggatgagcttgtccagtacgtgcgaacaaccctggttccggccatagacgaggcc
acgggcaacacgcggttcatccaagaggagctcagccatctcctcgcggtcgccgggata
cttccgatgtttgggttccccacccaggtccggagccttttccacgacaagggcaagccg
tcgaagctagaagaggtcgtcgttagcgacaggccgcttgaccatgctgtatgggcgttc
tctcctggttcggagatccccaaggacaagcagctgaataccgcgattggattcgtcctc
aggcgagatggtccgaacggtgtcacgaacgatccccagccgctcggccgaccgacgacc
tacacccgatgcgaggaagtcatgtgtgcaacgatagcagccggcggacacaatcaatgc
gtgacttgcggcggggcatcggtggcgtttcccctttaccagccgaaggggttcctagga
gcctaccgcaggcgagactacgatggggagagacagcgtggtcctgcactgcctccgccc
gtccgggcattcgagcaagagtttggcgacgagggttgcggtccgatgaagatcgcattc
cggcccgggccagtcgcggttgtcaacgacaacggtgggcggctgttcgagttcttccag
catacaagcgagcgcgtggtggtgcgggacgccgcgctctatcgggacgaatcgccacca
atcgacgccaatgcctctaccgccccctaccttgacaggggagcgatcggcgcagtcttc
acgaccgaggtattgagcttcttcatcgatggcgcccaaggggtcggccgcttgggagtt
ctcgacacgcgcaatcaaccagccgcgcgcgcggcgctcgcgtcatatgcggaattggtc
aagctatcgcttgcaacggcgctcgacatcgatccttccgaattcagggtcggccggcag
gccctgcgaagggccgactgcgagaccgagcaagtgttcgtagcagatgcgctcgagaat
ggcgctggctacgcacgctgggcctcggaccccttgaacctggagcgcgccatccgtggg
ttccatgacgcggtggcgccgaaatggcaggcaacgggacattcgcatgactgcgaccgg
tcatgcccggactgccttcgaaactatggcaatcgcttcagccatggaatcctggattgg
cgcctcgcgcttgacgtcgcggacctcgtccttgggatgcccctgccactggaacgatgg
atcgaggatagcgagttgaagtctgtcttgtccttctccaggttttgcgcggatgcgggc
atgcaggtgcagcatgggcatgcgggcggcctaagctacgtaagcagcgggaaaaaggcg
ctcgtcctgggccatccgctctggcatacggagccgggctacctccagccgcagcaaata
caggcacgcgacgaattgaggctggacggcgtcgaggcagttttcgtcgattccagggac
ttctctacccgcatggcgaactactacttgaggctacaggcgtga
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