Solimonas sp. K1W22B-7: D0B54_01185
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Entry
D0B54_01185 CDS
T05591
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sok
Solimonas sp. K1W22B-7
Pathway
sok02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sok00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
D0B54_01185 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sok03021
]
D0B54_01185 (rpoD)
Transcription machinery [BR:
sok03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D0B54_01185 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TniB
K-box
DUF4288
Motif
Other DBs
NCBI-ProteinID:
AXQ27383
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Position
241489..243387
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AA seq
632 aa
AA seq
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MSNNTEKADKPSAEMQAAQKQSQIKVLIALGKEKSYLTYAEVADHLPEIVDTEQIEDIIS
MIQAMGIPVHEDAPDEEQQLFSEPAVVATAEEEEEAAEEAAAAIAASDDQFGRTTDPVRM
YMREMGSVELLDREGEIRIAKRIEEGLNEAMFAMAQYPETVAILLESFENYKAGKKRLAE
IVTGFFDPNAPEELPPPVEIPPEIEEEEEVEEKAEGAEEEEEAVDTGPDPVLTAEKFSDL
QAFYDKAWEALLKKGASDRKTQEKREAMATHIMTFKLSPKIVDEITQNLRGKVEQVRETE
RTIMRICVADCGMTREEFLRMFKEDNGATNPDWINKAIRAKRKYSAELNGRKEEIFELQE
KLRKMEGDNLISLDEIKDINRRMNVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL
DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK
LNRISRQMLQEMGREPTPEELAKKMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF
IEDTAAVSPLESATSSSLAEATHQILASLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDV
TRERIRQIEAKALRKLRHPSRANYLRSFLDET
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgagcaataacactgagaaagccgacaagccgtccgccgaaatgcaggctgcgcagaag
caatcccagatcaaggtcctcatcgcgctcggcaaggaaaagtcctacctgacttacgcc
gaggttgcggaccatctgcccgagatcgtcgatacggagcagatcgaagacatcatcagc
atgatccaggcgatgggcatcccggttcatgaggacgccccggacgaagagcagcagctg
ttctccgagcctgcggtggtcgccaccgccgaggaagaagaagaggccgcggaagaagcc
gccgccgcgatcgccgccagcgacgaccagttcggccgcaccaccgacccggtgcgcatg
tacatgcgcgaaatgggcagcgtcgagctgctcgaccgcgagggcgaaatccgcatcgcc
aagcgcatcgaggaaggcctcaacgaggccatgttcgcgatggcgcagtacccggagacc
gtggcgatcctgctcgagtccttcgagaactacaaggccggcaagaagcgcctggccgag
atcgtgaccggcttcttcgaccccaacgctcccgaggagctgccgccgccggtcgagatc
ccgcccgagatcgaggaagaggaagaagtcgaggagaaggccgagggtgccgaggaagag
gaagaggccgtcgataccggcccggatccggtcctcaccgccgagaagttctccgacctg
caggccttctacgacaaggcctgggaagcgctgctgaagaagggcgcgtccgatcgcaag
acgcaggaaaagcgcgaggcgatggccacgcacatcatgaccttcaagctctcgccgaag
atcgtcgacgagatcacgcagaacctgcgtggcaaggtcgagcaggtgcgcgagaccgag
cgcaccatcatgcgcatctgcgtggccgactgcggcatgacgcgtgaagaattcctgcgc
atgttcaaggaagacaacggcgccaccaacccggactggatcaacaaggcgatccgcgcc
aagcgcaagtactccgccgagctcaacggccgcaaggaagagatcttcgagctgcaggaa
aagctgcgcaagatggaaggcgacaacctgatctcgctggacgagatcaaggacatcaac
cgccgcatgaacgtcggcgaggccaaggcccgccgcgccaagaaggaaatggtggaggcc
aacctccgcctggtgatctccatcgccaagaagtacaccaaccgcggcttgcagttcctc
gacctgatccaggaaggcaacatcggcctgatgaaggccgtggacaagttcgaataccgc
cgcggttacaagttctcgacctacgccacctggtggatccgccaggccatcacccgctcg
atcgccgaccaggcgcgcaccatccgtatcccggtgcacatgatcgagaccatcaacaag
ctcaaccgcatcagccgccagatgctgcaggagatgggccgcgagcccacgccggaagag
ctggccaagaagatggagatgcccgaggacaagatccgcaaggtgctgaagatcgccaag
gagccgatctcgatggaaacgccgatcggcgacgacgaggattcgcacctcggcgacttc
atcgaggacaccgccgcggtctcgccgctggaatcggccacctcgtcctcgctggcggaa
gccacgcaccagatcctggccagcctgacgccgcgcgaggccaaggtgctgcgcatgcgc
ttcggcatcgacatgaacaccgaccacacgctggaagaggtcggcaagcagttcgacgtc
acccgcgagcgcatccgccagatcgaggccaaggcgctgcgcaagctgcgccacccgagc
cgtgcgaattacctgcgtagtttcctcgacgagacctga
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