Solimonas sp. K1W22B-7: D0B54_13750
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Entry
D0B54_13750 CDS
T05591
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sok
Solimonas sp. K1W22B-7
Pathway
sok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0B54_13750 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sok03019
]
D0B54_13750 (rnr)
03016 Transfer RNA biogenesis [BR:
sok03016
]
D0B54_13750 (rnr)
Enzymes [BR:
sok01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D0B54_13750 (rnr)
Messenger RNA biogenesis [BR:
sok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D0B54_13750 (rnr)
Transfer RNA biogenesis [BR:
sok03016
]
Prokaryotic type
tRNA degradation factors
D0B54_13750 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Rho_RNA_bind
RNA_pol_Rbc25
Motif
Other DBs
NCBI-ProteinID:
AXQ29678
LinkDB
All DBs
Position
complement(3022971..3025319)
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AA seq
782 aa
AA seq
DB search
MEDDAEFQQEQGRYADPIPSRAHILKTLGEQPGPVTLDDLVGLFGLRKLSQQEALNKRLV
AMSREGQVVQNRNGAYGPVAQMNLIAGCVQAHRDGFGFLIPDAGGPDVFLPPRQMRALMN
GDRVLVRITGTDFKGRPEGAVSEVIERVSRTIVGRFHMDQGISYVIPDNPRITQDLLIPP
EGRKGAKNGQMVVADIVTPPGNRTLAVGEVKEILGQHLAPGMEIEAAIRAHSLPFEFPDA
VERESAAIPDTVQPAQMAGREDIRDLPLVTIDGADARDFDDAVYAKPIKKSLLNKGGWTL
WVAIADVSAYVRPDTPLDKEASKRATSVYFPQRVIPMLPEKLSNGLCSLNPDVDRLCMVC
EMRVMPDGEVAKSRFFEGVMRSKARMIYEDVAEILDQPDGEKARARSALVPHLQALDGVF
EALFKARERRGAIDFESTETKIVFSGERKIDRIVPVQRNRAHRLIEECMIAANVESAKTV
QKAKVPTLYRIHEQPDTMKVTALREFLALQALKLGGGEKPAAMDFAKALAAAKGRPDQML
VQTIMLRSLMQAKYNPTNSGHFGLALTHYAHFTSPIRRYPDLLLHRGLKHILLKKKGQPF
LYTPEQMEAFGTHCSMAERRADEATRDVNTWLKCEYMRHRVGEDFDGTVSSVAAFGLFVE
LTGLYVDGLVHVSNLKNDYYEYDNRSHRLVGKASRMTYTLGTKVRVKVVRVDLDERKIDL
ELLSSGKGQPGPGKGQGGQGKGQRSQDRRSEPKHSEPRHSEPVKPRGSESHPSKSHSRRG
KR
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgatgccgagttccagcaggaacagggccgttacgccgaccccatccccagc
cgtgcccatatcctcaagaccctgggcgagcagcccgggccggtgacgctcgacgacctg
gtcggcctgttcggcctgcgcaagctgtcgcagcaggaggcgttgaacaagcgcctggtc
gccatgtcccgcgaaggccaggtggtgcagaaccgcaatggggcctacggccccgtggcg
cagatgaacctgatcgccggctgtgtgcaggcccaccgcgacggcttcggcttcctgatc
ccggacgccggcggcccggacgtgttcctgccgccgcgccagatgcgcgcgctgatgaat
ggcgaccgtgtgctggtgcgcatcaccggcaccgacttcaagggccgccccgagggcgcg
gtgtccgaggtgatcgaacgcgtcagccgcaccatcgtcggccgcttccacatggaccag
ggcatctcctacgtgatcccggacaatccgcgcatcacccaggacctgctgattccgccg
gagggccgcaagggcgccaagaacggccagatggtggtggccgacatcgtcaccccgccg
ggcaaccgcacgctggccgtgggcgaggtcaaggaaatcctgggccagcacctggcgccg
ggcatggagatcgaggccgcgatccgtgcccacagcctgccgttcgaatttccggatgcg
gtcgagcgcgagtccgccgccattcccgacaccgttcagccggcgcagatggctggacgc
gaggacatccgcgacctgccgctggtcaccatcgacggtgccgatgcgcgcgacttcgac
gacgcggtctacgccaagccgatcaagaagagcctgctcaacaagggcggctggacgctg
tgggtggccattgccgacgtctccgcctacgtgcgccccgacacgccgctggacaaggag
gcctccaagcgcgccacctcggtgtacttcccgcagcgcgtcatcccgatgctgccggag
aagctgtccaacggactgtgctcgctcaaccccgacgtggaccgcctgtgcatggtctgc
gagatgcgcgtgatgcccgacggcgaagtcgccaagtcgcgcttcttcgaaggcgtgatg
cgctccaaggcacgcatgatctacgaggacgtcgccgagatcctcgaccagccggacggc
gagaaggccagggcgcgctccgccctggtgccgcacctgcaggccctcgacggcgtgttc
gaggccctgttcaaggcgcgcgagcgccgcggtgccatcgacttcgaaagcaccgagacc
aagatcgtgttctccggcgagcgcaagatcgaccgcatcgtgcccgtacagcgcaaccgc
gcgcatcgcctcatcgaggaatgcatgatcgccgccaacgtcgagtcggccaagacggtc
cagaaggcgaaggtgccgacgctctaccgcatccacgagcagcccgacacgatgaaggtc
acggcgctgcgcgagttcctggcgctgcaggccctgaagctcggcggcggcgagaagccg
gcggcgatggatttcgccaaggcgctggcggcggccaagggccggcccgaccagatgctg
gtgcagaccatcatgctgcgctcgctgatgcaggcgaagtacaacccgaccaacagcggc
cacttcggcctggcgctgacgcactacgcgcacttcacctcgccgatccgccgctacccg
gacctgctgctgcaccgcggcctcaagcacatcctgttgaagaagaagggccagcccttc
ctctacaccccggagcagatggaagccttcggcacgcattgctcgatggccgagcgccgt
gccgacgaggccacgcgcgacgtcaacacctggctcaagtgcgagtacatgcgccaccgc
gtcggcgaggacttcgacggcacggtgtccagcgtcgcggccttcggcctgttcgtggag
ctgaccggcctgtacgtcgatggcctggtccacgtcagcaacctcaagaacgactactac
gagtacgacaaccgctcccaccgcctggtcggcaaggccagccgcatgacctacacgctg
ggcaccaaggtgcgcgtaaaagtcgtgcgcgtggacctggatgagcgcaaaatcgacctt
gagctgctcagttccggcaagggtcagcccggccccggcaagggccagggaggccagggc
aagggacaaaggtcgcaggaccggcgttcggagcccaagcattcagaacccaggcattca
gaacccgttaagccgcgcggctcagaatcccacccatccaagtcccattcccgaaggggg
aaacgatga
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