Solimonas sp. K1W22B-7: D0B54_15345
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Entry
D0B54_15345 CDS
T05591
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sok
Solimonas sp. K1W22B-7
Pathway
sok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0B54_15345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sok03019
]
D0B54_15345
03009 Ribosome biogenesis [BR:
sok03009
]
D0B54_15345
Enzymes [BR:
sok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D0B54_15345
Messenger RNA biogenesis [BR:
sok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D0B54_15345
Ribosome biogenesis [BR:
sok03009
]
Prokaryotic type
rRNA helicases
D0B54_15345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AXQ29968
UniProt:
A0A346N331
LinkDB
All DBs
Position
complement(3421556..3423595)
Genome browser
AA seq
679 aa
AA seq
DB search
MSDESSAVSVRFSDLGLSAPVLQALIDVGYETPSPIQAATIPMLLEGRDVLGQAQTGTGK
TAAFALPALSRIEVGQKKPQVLVLAPTRELAIQVAEAFQKYATHIPGFQVLPIYGGQSYG
PQLAGLRRGVQVIVGTPGRVIDHIEKGTLKLDSLRYLVLDEADEMLRMGFIDDVEKILQQ
TPETRQVALFSATMPSQIRRIAQTYLKSPAEITIKAKTTTATNIRQRYWMVSGMQKLDAL
TRILEVESFEGMLIFARTKNETADLADKLSARGFSAVALNGDIAQRDRERIVQKLKDGSI
DIVVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVAPRERHL
LQAIERATRQTIQRMDLPSTDAVNDQRIGRFKQRIVDALGGDGLDVFRELIESVEREQNV
PAVEIAAALARLVQGNTPLLVAAQASTPAAAPRREPAARDFRENRRPERRDYVAPERPMR
TERFERPEHSVRAEQVEAPPARAERFEKPVRAERPERPERTEQAERPERQRREKNNDEPS
ETYRIEVGHAHGVQPGNIVGAIANEAGLESEYIGRIDIREDHSFIDLPQGMPKDVFRDLQ
KTWVCGQQLRISRAGDSPELPYVTPAKRPTPKMPAKTLGLGKPQGAGARPSPGGPRISHG
KSEHRGAGKPGGPRKAPRY
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgaatcttccgccgtttccgtccgcttttccgatcttggcctgagcgctccc
gtgctgcaggcgctgatcgacgtcggctacgaaaccccctcgccgatccaggcggccacg
atcccgatgctgctggaaggccgcgacgtgctgggccaggcccagaccggcaccggcaag
accgccgccttcgcgctgccggcgctgtcgcgcatcgaggtcggccagaagaagccgcag
gtgctggtgctcgcccccacccgcgagctggcgatccaggtcgccgaagccttccagaag
tacgccacgcacattccggggttccaggtgctgccgatctacggcggccagagctacggc
ccgcagctggccggcctgcgccgcggcgtgcaggtcatcgtcggcacgccgggtcgcgtg
atcgaccacatcgagaagggcacgctcaagctcgacagcctgcgctacctggtgctggac
gaggccgacgaaatgctgcgcatgggcttcatcgacgacgtcgagaagatcctgcagcag
actcccgagacgcgccaggtggcgctgttctccgccacgatgccctcgcagatccgccgc
atcgcgcagacctacctgaagtccccggccgagatcacgatcaaggccaagaccaccacc
gcgaccaacatccgccagcgttactggatggtcagcggcatgcagaagctggacgcgctg
acccgcattctcgaagtggaaagcttcgagggcatgctgatcttcgcgcgcaccaagaac
gagaccgccgatctggccgacaagctgtcggcccgcggcttctccgccgtggcgctcaac
ggcgatatcgcccagcgtgaccgcgagcgcatcgtgcagaagctcaaggacggctcgatc
gacatcgtggtcgccaccgacgtcgccgcgcgcggcctcgacgtggagcgcatcagccac
gtcgtcaactacgacatcccgaccgacaccgagtcctacgtgcaccgcatcggccgcacc
ggccgtgccggtcgcagcggcgacgcgatcctgttcgtcgccccgcgcgagcgccacctg
ctgcaggcgatcgagcgcgccacgcgccagacgatccagcgcatggacctgcccagcacc
gacgcggtcaacgaccagcgcatcggccgtttcaagcagcgcatcgtcgacgccctcggc
ggcgacggcctggacgtgttccgcgaactgatcgagtcggtggagcgcgagcagaacgtg
ccggccgtggagatcgccgccgcgctggcgcgcctggtgcagggcaacaccccgctgctg
gtggccgcacaggccagcaccccggcggccgcgccgcgccgcgagccggccgcgcgcgac
ttccgcgagaaccgtcgccccgagcgccgcgactacgttgccccggagcgcccgatgcgc
accgagcgcttcgagcgtccggagcattccgtgcgcgccgagcaggtcgaggccccgccc
gcccgcgccgagcgtttcgagaagccggtccgcgccgagcgtccggagcgtcctgagcgc
accgaacaggccgagcgtcccgagcgccagcgccgcgagaagaacaacgacgagcccagc
gagacctaccgtatcgaagtgggccacgcccacggcgtgcagccgggcaacatcgtcggc
gccatcgccaacgaggccggcctggagagcgagtacatcggccgcatcgacatccgcgag
gaccacagcttcatcgacctgccgcagggcatgccgaaggacgtgttccgcgacctgcag
aagacctgggtctgcggccagcagctgcgcatcagccgcgccggcgactcgccggagctg
ccgtacgtaacgcccgccaagcgtccgaccccgaagatgccggccaagaccctgggcctg
ggcaagccgcagggcgccggcgcccgcccgagccccggcggtccgcgcatcagccacggc
aagtccgagcaccgcggtgccggcaagccgggtggcccgcgcaaggctccgcgttactga
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