Solimonas sp. K1W22B-7: D0B54_20100
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Entry
D0B54_20100 CDS
T05591
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sok
Solimonas sp. K1W22B-7
Brite
KEGG Orthology (KO) [BR:
sok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sok03019
]
D0B54_20100 (hrpB)
Enzymes [BR:
sok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
D0B54_20100 (hrpB)
Messenger RNA biogenesis [BR:
sok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D0B54_20100 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
ResIII
Flavi_DEAD
AAA_30
AAA_19
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AXQ30843
UniProt:
A0A346N5K6
LinkDB
All DBs
Position
complement(4447569..4450037)
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AA seq
822 aa
AA seq
DB search
MKLPLPDLPVREALPALRQALSGGGRAVLAAPPGSGKTTLIPLELLAEPWLKGLRIVMLE
PRRVAARAAAARMAQLLGEPVGQTVGYQIRFERKVSAATRIEVVTEGLLARRLQADPELP
GVGLLIFDEFHERSLDADLALALSLDVRANLNPELRLLVMSATLDTQRVARLLDDAPVVQ
SGGQLFPVDIRYLTQRADADHGEVVAQGVITALAETPGDVLAFLPGAREIRGAQRRLEAR
TQAAIYPLYGELSSAEQDAALQPDRDGRRKVILATNIAQTSLTVEGVTTVVDGGLVRVAR
FDLGAGANRLETQRVSRASADQRAGRAGRLGPGHCYRLWNRDQQAALAQHDTPEILAADL
SRFALELAVWGASEPAQLGFLDPPGTVSWTYARELLRELGAVNAQGRITPHGRELARLPA
APRRAQMLLLAKARGLGALAAWTAAVLEERDGGASDLAATVQAYLQGRAADPNALRRVRD
SARQMGRQVDATEQPVADDRDVARLVSWAYPERIARRRGSQRGVYLCEDGGEARIGEHDP
LSASEWLAIAHWDPGPPRKIRLAAALREDELLRDQAARIVDVQDCRWDPQTDAVVSETQR
RLGAIVLERRMLRGGAEEKIRTAMLAGIRALGLQALPWNEAARQWQARVLSLRQWRPEDS
WPDVSDEGLLATLEDWLAPSLDGVTRRDHLARLDLMEILNASLDYATQQKLGRLAPTHMD
VPTGSRVRLEYRPPEAPLLSVRLQEMFGCAQTPTVNDGRNRVVLELLSPGQRPVAITPDL
AGFWAGSYSDVKKDMKGRYPRHPWPDNPLEAAPTRRAKPRGT
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcccgctgcccgacctgccggtccgcgaggctttgccggcactgcgccaggcc
ctttccggcggcggccgcgccgtgctggccgcgccgccgggctccggcaagaccaccctg
atcccgctggaactgctggccgagccctggctcaaggggctgcgcatcgtcatgctggaa
ccgcgccgcgtcgccgcgcgcgccgccgcggcgcgcatggcgcagctgctgggcgagccg
gtgggccagaccgtgggctaccagatccgcttcgagcgcaaggtttccgcggccacgcgg
atcgaggtcgtcaccgagggcctgctggcgcggcgcctgcaggccgacccggagctgccc
ggcgtgggcctgctgatcttcgacgagttccacgagcgcagcctcgacgccgacctcgcg
ctggcgctgagcctggacgtgcgcgccaacctcaaccccgagctgcgcctgctggtgatg
tcggcgacgctggacacgcagcgcgtcgcgcgcctgctggacgatgcgccggtggtgcag
agcggcggccagctgttcccggtggacatcagatacctgacgcagcgcgccgatgccgac
catggcgaggtggtggcgcagggcgtgatcacggcgctggccgagacgccgggcgacgtg
ctggccttcctgcccggggcgcgcgagatccgtggcgcgcagcgccggctggaagcgcgc
acccaggccgccatctatcccctctatggcgagctgtcctcggccgagcaggacgccgcg
ctgcagcccgaccgcgacggtcgccgcaaggtgatcctggccaccaacatcgcccagacc
agcctcaccgtggagggtgtcaccaccgtggtcgacggcggcctggtgcgcgtggcgcgt
ttcgatctcggtgccggcgccaaccgcctggagacgcagcgcgtctcgcgcgcctccgcc
gaccagcgcgccggccgtgccggccgcctcggtcccggccactgctaccgcctgtggaat
cgcgaccagcaggcggcactggcccagcacgacacaccggaaatcctcgccgccgacctg
tcgcgcttcgcgctggagctggcggtctggggcgcgagcgagccggctcaactcgggttc
ctcgatccgccgggcacggtgagctggacctatgcgcgcgagctgctgcgcgaactcggc
gcggtgaacgcgcagggccgcatcacgccgcacggccgcgaactggcgcgcctgccggcg
gcgccgcggcgtgcacagatgctgttgctggccaaggcccgcggcctcggcgcgcttgcg
gcctggaccgcggcggtgctggaagagcgcgacggcggcgccagcgatctcgccgccacg
gtgcaggcctacctgcagggccgcgccgccgatcccaatgcgctgcgccgcgtgcgcgac
tccgcgcgccagatggggcggcaggtcgatgccaccgagcagcccgtcgccgacgaccgc
gacgtcgcgcgcctggtcagctgggcctatcccgagcgcatcgcccgccgccgcggcagc
cagcgcggcgtctacctctgcgaggacggcggcgaggcgcgcatcggcgaacacgatccg
ctgtccgcgtccgagtggcttgccatcgcgcactgggacccaggaccaccccgcaagatc
cgcctcgccgccgcgctgcgcgaagacgaactgctgcgcgaccaggccgcgcgcatcgtc
gacgtgcaggactgccgctgggacccgcagaccgatgccgtggtctccgagacgcagcgg
cgcctcggtgcgatcgtgctcgagcgccgcatgctgcgcggcggcgccgaagagaaaatc
cgcaccgcgatgctcgccggcatccgcgccctcggcctgcaggcactgccctggaacgag
gccgcgcggcagtggcaggcgcgggtgctgtcgctgcgccagtggcgtcccgaagacagc
tggcccgacgtctccgacgagggcctgctggcgacgctggaagactggctggcgccctcc
ctcgatggcgtcacgcggcgcgatcaccttgcgcgtctggacctgatggaaatcctcaac
gccagcctcgactacgccacgcagcagaagctcggtcggctggcgccgacgcatatggac
gtgcccaccggctcgcgcgtgcgcctggaataccgcccgccggaagcgccgctgctgtcg
gtgcgcctgcaggagatgttcggctgcgcccagacccccacggtcaacgacggccgcaac
cgcgtggtgctggaactgctctcccccggccagcgcccggtcgcgatcacccccgacctc
gccggtttctgggccggcagctacagcgacgtgaagaaggacatgaaggggcggtatccg
cggcatccctggccggacaatccgctggaagcggcgccgaccagaagggcgaagccgcgg
gggacgtga
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