Streptomyces okerensis: ACE1N8_23630
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Entry
ACE1N8_23630 CDS
T11145
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
soke Streptomyces okerensis
Brite
KEGG Orthology (KO) [BR:
soke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soke03021
]
ACE1N8_23630
Transcription machinery [BR:
soke03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACE1N8_23630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
PF0610-like_N
DUF7343
Sigma70_ECF
MarR_2
NirdL-like_HTH
HTH_24
IF2_N
MarR
HTH_3
HTH_Crp_2
GerE
HTH_ParB
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
XKV06977
LinkDB
All DBs
Position
complement(5208328..5209500)
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AA seq
390 aa
AA seq
DB search
MRDEERGTRELPAERVPDGIDGIPEQARPHPEDDSTETVSPGGGQPGGPVRGTHADGRTG
GADARAHGGPPARAEPGVGEEPVSGDEASARGRATGQAMSEHERNAEEEAPRASGSQGAR
SAPGTPGARGSHGTHARHDPTDRSGARALFLELRVLEDGTAEYAELRNRLVRMHLPLVEH
LARRFRNRGEPLDDLTQVATIGLIKSVDRFDPDRGVEFSTYATPTVVGEIKRHFRDKGWA
VRVPRRLQELRLALTTATAELSQLHGRSPTVHELAEKLAISEEEVLEGLESANAYSTLSL
DVPDTDDESPAVADTLGAEDEALEGVEYRESLKPLLEDLPPREKRILLLRFFGNMTQSQI
AQEVGISQMHVSRLLARTLAQLREKLLVEE
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
gtgcgggacgaagagcgcggcacacgggagctgccggccgagcgtgtgccggacggcatc
gacggcatccccgagcaggcccggccgcatccggaggacgactccacggagaccgtctcc
ccgggcggcgggcagcccgggggccccgtgcggggcacgcacgcggacgggcggaccggt
ggcgcggacgcccgcgcgcacgggggtccccccgctcgggcggagccgggagtgggggag
gagccggtgtcgggggacgaggcgagcgctcggggaagggcgacgggccaggcgatgagc
gagcacgagcgaaacgccgaggaggaggcgccgcgggcgtccggttcccagggcgcgcgg
agcgcacccggcacaccgggtgcgcggggctcccacggcacgcacgcgcgccacgacccg
acggaccgcagcggggcgcgcgccctgttcctcgagctgcgcgtgctggaggacggcacc
gccgagtacgcggagctgcgcaaccggctggtgcgcatgcatctgccgctcgtcgagcat
ctcgcgcgccgcttccgcaaccgcggcgagccgctggacgacctgacccaggtcgccacc
atcggtctgatcaagtccgtcgaccggttcgacccggaccggggcgtggagttctcgacg
tacgccaccccgacggtcgtcggcgagatcaagcggcacttccgtgacaagggctgggcg
gtgcgggtgccgcgccggctccaggagctgcggctggcgctcaccacggccacggcggag
ctgtcccagctgcacggccgctcccccacggtgcacgagctggccgagaagctggccatc
tccgaggaggaggtcctggagggcctggagtccgccaacgcgtactcgacgctgtccctg
gacgtgcccgacaccgacgacgagtccccggcggtggccgacaccctcggcgccgaggac
gaggcgctggagggcgtggagtaccgggagtcgctcaagccgctgctggaggaccttccg
ccgcgcgagaagcggattctgctgctgcgcttcttcggcaacatgacccagtcgcagatc
gcgcaggaggtcggcatctcgcagatgcacgtctcccggctgctggcccgcaccctggcc
cagctgcgggagaagcttctcgtggaggagtga
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