Saccharolobus solfataricus 98/2: Ssol_1269
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Entry
Ssol_1269 CDS
T02126
Name
(GenBank) RNA binding S1 domain protein
KO
K07573
exosome complex component CSL4
Organism
sol
Saccharolobus solfataricus 98/2
Pathway
sol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ssol_1269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sol03019
]
Ssol_1269
Messenger RNA biogenesis [BR:
sol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Ssol_1269
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Ssol_1269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
S1
OB_RRP5_4th
Zn_ribbon_Com
DUF5817
Cas12f1-like_TNB
HypA
C1_1
Motif
Other DBs
NCBI-ProteinID:
ACX91505
UniProt:
D0KRY6
LinkDB
All DBs
Position
complement(1177300..1177869)
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AA seq
189 aa
AA seq
DB search
MRTQGELTLPGEELAVIEEFMTGDGTYEQNGIVRAAVVGKIFYDMLNRKSNVLGFKKIIF
QHLKKAKYVIGIVNSIKEDSALVSIVGIEERGLASPISAYLHISQISNKKINNVTDAIKI
GDVIKAKLLSYTFPLALTIKMKDLGVIYARCSRCGYLLIKQDENNLKCQRCGNIEQRKIG
SYMVKKGGN
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
gtgagaactcaaggcgaattaactttaccaggagaggagttagcagtaattgaagaattt
atgactggcgatggtacgtatgaacaaaatggtatagttagagccgcagttgtaggaaag
atcttttatgatatgctaaataggaagagtaacgtactaggatttaagaaaattatattt
caacatttgaagaaggctaaatatgtgattggcattgttaattctatcaaagaagactca
gcactagtttcaatagtagggatcgaggagagaggtcttgcgtcaccaatttcagcttac
ttacatatttctcaaataagtaataaaaaaattaataatgtaacagatgctataaaaatc
ggagatgtaattaaagctaaattactttcatacacttttcccttggctttgaccattaaa
atgaaagatcttggtgttatttacgctagatgctcaagatgtggatatttattgattaag
caagacgaaaataatttaaaatgtcagagatgcggaaatattgaacaacgaaaaatagga
tcttatatggtgaagaaaggtggaaattag
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