Saccharolobus solfataricus 98/2: Ssol_1945
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Entry
Ssol_1945 CDS
T02126
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sol
Saccharolobus solfataricus 98/2
Brite
KEGG Orthology (KO) [BR:
sol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sol03016
]
Ssol_1945
Enzymes [BR:
sol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Ssol_1945
Transfer RNA biogenesis [BR:
sol03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Ssol_1945
Prokaryotic type
tRNA splicing ligases
Ssol_1945
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF6330
Motif
Other DBs
NCBI-ProteinID:
ACX92156
UniProt:
D0KTT7
LinkDB
All DBs
Position
1730198..1731646
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AA seq
482 aa
AA seq
DB search
MQINITRVSTYEWRIDKGAQECMKVPVTIFADDVLIEKMKQDMTLRQATNVACLPGVQES
IYVLPDGHQGYGFPIGGIAATAIEEGGVVSPGGIGYDINCGVRLLRTNLDYKDVKPKLAQ
LVEELHRNVPSGVGSEGKVKLTYQQLDQVLAEGVAWAVDKGFGWKEDMNHMEQRGSWELA
DPSKVSPIAKQRGASQLGTLGAGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGS
RGLGHQVASDYLQIMERAMKKYNIQLPDRELAAVPFESREGQDYFHAMASGANFAWTNRQ
LITHWTRESFGRVFGVDPEKLDLSIVYDVAHNIAKIEEYVIGGERKKVLVHRKGATRAFP
PGSPEIPADHRNIGQIVLIPGSMGTASYVMAGIPEGRRTWFTAPHGAGRWMSREAAVRNY
PANVVVETLAEKGIVVRAATRRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVMRLRPIGVT
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcagattaacattactagagttagcacatacgagtggcgtattgataaaggcgctcaa
gagtgtatgaaagttcccgttacaatatttgcagatgacgttctaattgaaaaaatgaaa
caagatatgacattaagacaagcaactaacgtagcttgtttacccggtgtccaagagtca
atttacgttttaccagatggtcatcaaggttacggttttcctataggcggtatagcagct
actgcgatcgaggaaggaggagtggtaagtcctggaggtataggatatgacataaattgt
ggtgtcagattactcagaactaatttagactataaagatgtaaagccaaaattagctcag
ttggttgaggagctgcatagaaacgtgccgagcggtgtaggaagtgagggtaaagtaaaa
ttgacatatcagcaattagatcaagtattagcggaaggagttgcgtgggcggttgataag
ggctttggatggaaagaagacatgaatcacatggaacaacgtggtagctgggagctagcc
gatccttcaaaagtaagtccgatagcaaaacaaagaggtgcctctcagttaggaacttta
ggagctggtaatcatttcttggaaattcaagttgttgataagatatttgatccccaaatt
gctaaagcaataggggtagatcacgaaggtcaagtaatggttatggttcatacgggttca
agaggtttaggtcatcaagtagctagtgattatttacagataatggaaagagcaatgaag
aagtataacattcaattgccagatagagaactagctgcagttccctttgagagtagagag
ggtcaggattactttcatgcaatggcatctggagctaattttgcgtggacgaatagacaa
ttgattacgcattggacgagagagagtttcggtagagtatttggtgtcgacccagaaaaa
ttagatcttagcatagtttatgatgtagctcataatatagctaaaattgaggagtatgta
attggtggagaaaggaagaaggtattagtacataggaaaggtgctactagggctttcccg
cctggtagtccggagattcccgctgatcatagaaatattggccagattgttttaatccca
ggtagtatgggcactgctagttatgttatggctggaataccagaaggtagaaggacatgg
tttactgcgcctcatggtgctggtaggtggatgtctagggaagctgcagtgagaaattac
cctgctaacgtagtagttgaaactttagctgaaaagggtatagtagtaagggctgctact
agaagggtagtagctgaagaagcaccgggagcctacaaagatgttgatagggtagctaaa
gttgctcatgaagttaaaattgctaaattagttatgcgattaagacccataggggttacc
aaaggatga
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