Schizosaccharomyces osmophilus (fission yeast): SOMG_00278
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Entry
SOMG_00278 CDS
T09274
Symbol
shm1
Name
(RefSeq) serine hydroxymethyltransferase Shm1
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som00260
Glycine, serine and threonine metabolism
som00460
Cyanoamino acid metabolism
som00630
Glyoxylate and dicarboxylate metabolism
som00670
One carbon pool by folate
som00680
Methane metabolism
som01100
Metabolic pathways
som01110
Biosynthesis of secondary metabolites
som01200
Carbon metabolism
som01230
Biosynthesis of amino acids
som01240
Biosynthesis of cofactors
som04981
Folate transport and metabolism
Module
som_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
som00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
SOMG_00278 (shm1)
09102 Energy metabolism
00680 Methane metabolism
SOMG_00278 (shm1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
SOMG_00278 (shm1)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
SOMG_00278 (shm1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
SOMG_00278 (shm1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
SOMG_00278 (shm1)
Enzymes [BR:
som01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
SOMG_00278 (shm1)
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Beta_elim_lyase
Aminotran_1_2
Motif
Other DBs
NCBI-GeneID:
80873762
NCBI-ProteinID:
XP_056035165
UniProt:
A0AAF0ATS5
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All DBs
Position
1:complement(609420..610814)
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AA seq
464 aa
AA seq
DB search
MASPDIMLTHLKEQDPTVAEIMKHEAGRQRSSIVLIASENFTSRAVMDALGSVMSNKYSE
GYPGHRYYGGNKYIDQIETLCQERALAAFNLDSSKWGVNVQCLSGSPANLQVYQAIMPPH
GRLMGLDLPSGGHLSHGYQTDTKKISAVSAYFETMPYRVDPSTGIIDYDTLEKNAQLYRP
KIIVAGTSAYCRLIDYKRMREIADSVNAFLVVDMAHISGLISAGVIPSPFEYADVVTTTT
HKSLRGPRGAMIFFRRGLRNHDKKGNPVYYDLEEKINFSVFPGHQGGPHNHTITALAVAL
KQCLTPEYKQYQAQVVKNAKVCEEEFRNRGYKLAADGTDSHMVLVDVKSKGIDGARAERI
LELINIATNKNTLPSDKSALSPSGIRIGTPAMTTRGFKEQDFVRVVEYIDRAITLAADLQ
KSLPKEANKLKDFKAKLGEGSEINEVVQLQKDIAEWAESFPLAQ
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctgatattatgttgactcacctcaaggagcaagatcctaccgttgcagaa
attatgaagcatgaggctggacgccagcgttcttccattgtgctcattgcatctgaaaac
tttacttctcgtgctgttatggatgctcttggtagtgttatgagcaacaaatactctgaa
ggttaccccggtcatcgttactatggtggtaacaagtacattgatcaaattgaaactctt
tgccaagaacgtgctcttgctgctttcaatcttgattcttcgaagtggggtgttaatgtt
caatgtctttctggttcccctgctaaccttcaagtctaccaagctattatgccccctcat
ggccgcttgatgggacttgatttgccttctggtggccatctttcccatggttaccaaacc
gataccaagaagatcagtgctgtctctgcttacttcgagactatgccttatcgtgttgat
cctagcactggcatcattgactatgataccctcgaaaagaatgcccaactctaccgtccc
aagattatcgtcgctggtacctctgcttattgccgtctcattgattacaagcgtatgcgt
gagattgctgacagtgtcaatgcttttttggttgttgacatggctcacatttctggtctt
atttccgccggtgttatcccttctccctttgaatacgctgatgttgtcaccactactacc
cacaagtcccttcgtggtcctcgtggtgctatgattttcttccgtcgtggtctccgcaac
cacgataagaagggcaaccctgtttactatgatttagaagagaagatcaacttctctgtc
ttccctggtcaccaaggtggtcctcacaatcacactattactgctttggctgtcgctttg
aagcaatgccttacccctgaatataagcaataccaagctcaagttgttaagaacgctaag
gtttgtgaggaagaattccgtaaccgtggttataagctcgctgccgatggtactgacagc
catatggttttggttgatgtcaagagcaagggcattgacggtgcccgtgctgagcgtatc
ttggaattaatcaacattgctaccaacaagaacactttgccctctgacaaatctgctttg
tctccttctggtattcgtatcggtacccctgctatgactactcgtggcttcaaagaacaa
gacttcgttcgcgttgtcgagtacattgatcgtgctatcacccttgctgctgacttgcaa
aagagtctccctaaggaagccaataagctcaaggatttcaaggctaagttgggtgagggt
agtgaaattaacgaagttgttcaacttcaaaaggatattgctgagtgggctgaaagtttc
cctctcgctcagtaa
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